Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 4.6e-155 551.2 281 100.0
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 8.7e-130 467.2 270 86.3
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.6e-123 446.4 261 86.2
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 2.1e-115 419.5 283 77.4
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.8e-112 409.1 281 75.4
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 2.0e-110 402.9 282 75.2
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.0e-109 400.6 281 74.4
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 2.1e-107 392.9 281 75.1
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 6.1e-107 391.3 283 74.9
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.3e-106 390.2 278 71.9
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 2.3e-106 389.4 280 73.2
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 9.7e-105 384.0 286 73.1
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 3.7e-104 382.1 276 69.9
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 6.3e-104 381.3 248 77.8
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 8.2e-104 380.9 278 71.6
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 1.2e-102 377.1 281 71.5
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.5e-102 376.7 284 70.4
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 4.5e-102 375.2 279 70.3
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 5.9e-102 374.8 286 72.0
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.0e-101 374.0 278 70.5
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.7e-101 373.2 286 72.0
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 3.8e-101 372.1 257 74.7
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 6.5e-101 371.3 270 72.2
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 6.5e-101 371.3 260 71.9
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 8.5e-101 370.9 278 70.1
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.4e-100 370.2 291 68.7
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.5e-100 369.4 260 71.9
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 7.2e-100 367.9 282 68.4
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 6.1e-99 364.8 285 68.1
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.8e-98 363.2 281 69.8
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 2.3e-98 362.8 276 71.0
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 8.8e-98 360.9 282 68.4
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 4.4e-97 358.6 279 67.7
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 7.4e-97 357.8 287 68.3
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 1.3e-96 357.1 222 82.9
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.7e-96 356.7 271 68.6
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 3.7e-96 355.5 273 68.5
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 6.3e-96 354.8 202 87.6
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 8.2e-96 354.4 256 72.7
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.4e-95 352.8 277 66.1
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 4.1e-95 352.1 275 68.0
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 5.3e-95 351.7 281 67.6
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.9e-95 351.3 277 66.1
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.2e-94 350.5 274 68.2
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 2.0e-94 349.7 236 72.9
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 2.6e-94 349.4 272 68.8
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.7e-94 347.8 281 64.1
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.0e-93 347.4 281 62.6
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.3e-93 347.1 243 74.1
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.7e-93 346.7 283 66.1
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 3.8e-93 345.5 275 67.6
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 3.8e-93 345.5 275 67.6
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 5.0e-93 345.1 283 65.4
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 6.5e-93 344.7 247 68.8
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 6.5e-93 344.7 283 67.1
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.5e-93 344.4 210 81.0
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 8.5e-93 344.4 202 85.1
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 8.5e-93 344.4 254 70.9
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 4.2e-92 342.0 240 74.2
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.5e-92 341.7 269 66.2
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 7.2e-92 341.3 233 73.0
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 7.2e-92 341.3 279 64.9
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 9.4e-92 340.9 240 74.2
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.1e-91 339.7 234 74.4
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 2.7e-91 339.3 253 69.6
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.6e-91 339.0 238 73.5
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.1e-91 338.2 289 67.5
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.4e-90 337.0 289 67.8
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 3.0e-90 335.9 272 62.9
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 3.9e-90 335.5 254 67.7
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 3.9e-90 335.5 214 78.5
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 3.9e-90 335.5 233 74.7
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.9e-90 335.5 280 66.8
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 5.2e-90 335.1 263 67.3
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 5.2e-90 335.1 263 67.7
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 6.7e-90 334.7 223 75.3
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 6.7e-90 334.7 281 64.1
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 8.8e-90 334.3 233 73.0
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.1e-89 334.0 279 64.5
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-89 334.0 281 63.7
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 3.3e-89 332.4 290 67.6
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 1.3e-88 330.5 201 81.1
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 6.3e-88 328.2 210 77.1
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.8e-87 326.6 233 71.2
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 3.1e-87 325.9 238 71.4
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 4.1e-87 325.5 235 72.3
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 4.1e-87 325.5 271 66.8
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 7.0e-87 324.7 240 70.0
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 9.1e-87 324.3 288 67.0
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 9.1e-87 324.3 204 79.9
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 9.1e-87 324.3 204 77.9
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 1.6e-86 323.6 254 68.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 3.5e-86 322.4 201 80.6
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 4.5e-86 322.0 202 80.2
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 5.9e-86 321.6 230 70.0
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.7e-85 320.1 201 80.1
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.7e-85 320.1 201 80.1
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.9e-85 319.3 226 72.6
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 8.5e-85 317.8 207 75.8
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.5e-84 317.0 215 76.7
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.5e-84 317.0 203 78.8
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 9.4e-84 314.3 215 76.3
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.2e-83 313.9 226 72.1
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 2.7e-83 312.8 193 81.3
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.0e-82 310.8 241 68.9
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.0e-82 310.8 201 79.1
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 1.3e-80 303.9 215 72.6
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.1e-79 300.8 182 83.0
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.1e-79 298.9 202 76.2
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 5.3e-79 298.5 252 61.5
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 2.2e-77 293.1 186 80.1
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.5e-76 290.4 177 79.1
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.2e-75 287.3 244 59.8
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.1e-75 286.6 267 58.4
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 4.7e-75 285.4 177 79.1
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 4.7e-75 285.4 208 69.2
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 6.1e-75 285.0 227 64.3
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.4e-74 283.9 198 71.2
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 7.5e-73 278.1 230 63.9
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 7.5e-73 278.1 200 69.5
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.6e-70 270.4 179 77.1
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.6e-67 260.4 184 71.7
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.0e-66 257.7 186 74.2
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 1.2e-65 254.2 218 59.6
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.3e-64 250.8 219 58.4
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 3.7e-64 249.2 277 54.5
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 2.9e-61 239.6 219 55.3
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 3.3e-60 236.1 165 70.3
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 3.3e-60 236.1 165 70.3
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 7.3e-60 235.0 278 52.2
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.2e-59 234.2 277 52.7
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 6.1e-59 231.9 171 71.3
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.7e-56 223.8 131 84.7
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 2.5e-52 209.9 192 60.9
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 6.0e-46 188.7 111 81.1
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 6.6e-45 185.3 199 50.3
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 2.1e-43 180.3 113 79.6
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.2e-42 175.6 236 43.2
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 7.8e-38 161.8 95 83.2
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 4.7e-35 152.5 221 45.7
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.1e-34 151.4 207 46.9
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.8e-34 150.6 88 85.2
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 5.1e-29 132.5 200 39.5
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 1.9e-28 130.6 149 52.3
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 9.0e-26 121.7 102 62.7
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.6e-25 120.2 190 40.5
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 2.2e-24 117.1 211 35.5
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-22 111.3 70 74.3
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.2e-22 111.3 141 45.4
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 2.7e-22 110.2 205 34.6
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 4.5e-17 92.8 66 68.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 2.9e-16 90.1 201 32.3
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 4.9e-16 89.4 113 52.2
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 4.8e-11 72.8 65 55.4
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 4.0e-10 69.7 71 60.6
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 7.6e-09 65.5 38 81.6
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 2.9e-08 63.5 152 34.9
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 1.2e-06 58.2 55 56.4
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 1.2e-06 58.2 55 56.4
C09p34930 Brassica napus HOM05D001108 ORTHO05D005418 4.6e-06 56.2 51 58.8


User provided reference genes

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