Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 2.1e-79 298.9 144 100.0
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 2.8e-76 288.5 143 96.5
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 7.0e-67 257.3 144 86.1
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 2.7e-66 255.4 144 86.1
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 2.6e-61 238.8 142 81.7
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 4.9e-60 234.6 142 81.0
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.3e-60 233.8 142 81.0
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.6e-53 212.2 145 71.7
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 2.6e-53 212.2 145 71.7
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 1.7e-52 209.5 145 73.1
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.9e-52 208.0 145 71.0
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 4.9e-52 208.0 145 71.0
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.8e-51 206.1 145 71.0
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 7.0e-51 204.1 144 73.6
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 9.2e-51 203.8 145 70.3
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.6e-50 203.0 145 71.0
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 6.0e-50 201.1 145 66.9
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 6.6e-49 197.6 143 70.6
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 6.6e-49 197.6 145 69.7
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 6.6e-49 197.6 144 69.4
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 1.9e-48 196.1 143 69.2
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 4.3e-48 194.9 143 69.9
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 7.3e-48 194.1 145 66.2
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 1.6e-47 193.0 146 64.4
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.6e-47 193.0 143 68.5
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.1e-46 190.3 145 68.3
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.4e-46 189.9 144 66.7
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 3.1e-46 188.7 142 64.8
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 5.2e-46 188.0 145 66.9
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 1.2e-45 186.8 130 70.0
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 1.2e-45 186.8 145 64.1
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 2.6e-45 185.7 144 63.9
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 3.4e-45 185.3 144 66.0
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 3.4e-45 185.3 144 64.6
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.4e-45 185.3 167 57.5
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 5.8e-45 184.5 144 62.5
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 7.5e-45 184.1 145 62.8
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.1e-43 178.3 144 61.1
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 5.4e-43 177.9 144 61.1
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.6e-42 176.4 143 62.2
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 2.1e-42 176.0 143 61.5
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 2.7e-42 175.6 143 62.9
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 4.6e-42 174.9 143 61.5
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 4.6e-42 174.9 128 65.6
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 6.0e-42 174.5 145 60.7
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 1.3e-41 173.3 145 59.3
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.3e-41 173.3 145 61.4
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 3.0e-41 172.2 149 60.4
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 5.0e-41 171.4 150 57.3
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 6.6e-41 171.0 144 60.4
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 6.6e-41 171.0 146 62.3
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.1e-40 170.2 129 63.6
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.5e-40 169.9 142 59.2
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.3e-40 167.5 145 60.7
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 9.5e-40 167.2 149 55.7
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 2.1e-39 166.0 145 59.3
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 2.8e-39 165.6 147 59.9
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 8.1e-39 164.1 142 58.5
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 1.4e-38 163.3 142 55.6
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.8e-38 162.9 143 58.7
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 2.3e-38 162.5 159 54.7
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 2.3e-38 162.5 151 55.6
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 2.3e-38 162.5 145 58.6
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 4.0e-38 161.8 161 54.7
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 5.2e-38 161.4 145 56.6
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 8.9e-38 160.6 146 56.2
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 2.0e-37 159.5 144 56.9
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 1.3e-36 156.8 127 64.6
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 1.7e-36 156.4 143 53.8
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.2e-36 156.0 143 58.7
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 4.9e-36 154.8 161 51.6
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 4.9e-36 154.8 160 51.2
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 4.9e-36 154.8 161 49.7
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 3.2e-35 152.1 144 54.9
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 7.1e-35 151.0 145 53.8
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.2e-34 150.2 126 59.5
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 3.5e-34 148.7 150 52.0
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.3e-33 146.7 87 79.3
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 1.3e-33 146.7 146 51.4
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.7e-33 146.4 144 47.2
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 2.3e-33 146.0 145 48.3
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 3.0e-33 145.6 148 49.3
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 5.1e-33 144.8 145 48.3
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 6.6e-33 144.4 149 50.3
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 6.6e-33 144.4 144 47.9
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 6.6e-33 144.4 144 50.0
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.5e-32 143.3 145 47.6
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.5e-32 143.3 144 47.9
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.9e-32 142.9 144 46.5
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.9e-32 142.9 145 47.6
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 1.9e-32 142.9 144 46.5
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 2.5e-32 142.5 145 47.6
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 2.5e-32 142.5 144 46.5
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 3.3e-32 142.1 146 47.3
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 4.3e-32 141.7 145 47.6
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 4.3e-32 141.7 148 48.0
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 5.6e-32 141.4 159 47.8
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 9.5e-32 140.6 148 47.3
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.2e-31 140.2 147 44.9
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 1.6e-31 139.8 143 46.9
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 2.1e-31 139.4 146 45.9
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.8e-31 139.0 129 54.3
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.1e-30 137.1 146 45.2
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 1.1e-30 137.1 149 51.0
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 2.4e-30 136.0 144 50.7
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 6.8e-30 134.4 146 50.7
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.5e-29 133.3 144 48.6
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 5.8e-29 131.3 148 48.6
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 2.2e-28 129.4 144 49.3
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 2.2e-28 129.4 144 50.0
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 2.2e-28 129.4 131 45.0
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.8e-28 128.6 144 46.5
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 1.4e-27 126.7 144 47.2
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.5e-26 122.1 139 45.3
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.0e-26 121.3 140 45.7
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.0e-25 120.6 144 50.0
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.9e-25 118.6 140 44.3
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-24 115.9 139 44.6
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.5e-24 115.9 139 44.6
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.6e-23 113.2 114 50.0
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.1e-22 109.0 149 43.0
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.1e-22 109.0 149 43.0
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 4.0e-22 108.6 144 42.4
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.5e-21 106.7 105 50.5
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 2.0e-21 106.3 144 42.4
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 2.6e-21 105.9 153 41.8
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 4.9e-20 101.7 140 43.6
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.9e-19 99.8 68 70.6
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 4.6e-18 95.1 57 82.5
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 4.6e-18 95.1 87 57.5
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.3e-17 93.6 57 75.4
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 3.0e-17 92.4 90 52.2
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.9e-16 89.7 328 26.8
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 8.1e-15 84.3 58 63.8
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 5.3e-14 81.6 141 34.8
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 3.4e-13 79.0 121 34.7
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 2.9e-12 75.9 147 31.3
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 4.9e-12 75.1 88 44.3
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 8.4e-12 74.3 111 34.2
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.3e-08 62.4 109 30.3
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 4.3e-08 62.0 63 54.0
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 9.6e-08 60.8 121 32.2
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.8e-06 56.6 87 43.7
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 5.3e-06 55.1 91 37.4


User provided reference genes

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