Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 0.0e+00 1086.6 536 100.0
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 9.1e-245 850.1 537 79.1
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 3.5e-244 848.2 537 79.7
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.5e-239 832.8 537 77.7
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 4.4e-239 831.2 535 77.4
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 9.4e-234 813.5 535 76.3
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.3e-211 739.2 480 76.5
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 8.1e-201 704.1 539 65.3
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 4.0e-200 701.8 538 66.7
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 3.2e-197 692.2 537 64.2
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 9.2e-197 690.6 541 64.5
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 4.3e-194 681.8 539 63.6
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.7e-193 678.3 552 62.3
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.7e-193 678.3 552 62.3
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 6.2e-193 677.9 538 63.9
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 8.1e-193 677.6 538 64.5
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 9.9e-191 670.6 537 64.1
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.3e-190 670.2 537 64.2
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 6.4e-190 667.9 538 63.6
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 6.4e-190 667.9 538 63.6
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.4e-189 666.8 537 63.3
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 4.1e-189 665.2 535 63.4
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 1.6e-188 663.3 538 63.8
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 2.1e-188 662.9 538 63.0
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.7e-187 659.8 538 63.4
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 6.2e-185 651.4 547 63.1
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.5e-183 646.7 534 61.2
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 3.4e-183 645.6 536 61.6
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 9.9e-183 644.0 557 61.0
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-180 636.3 555 60.2
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 2.7e-180 636.0 555 59.6
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 1.3e-177 627.1 537 59.6
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 4.0e-176 622.1 537 59.8
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 9.0e-176 620.9 527 61.1
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 1.2e-175 620.5 522 60.3
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 6.4e-174 614.8 539 58.3
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.9e-173 613.2 525 60.8
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 2.7e-172 609.4 541 59.9
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 4.3e-170 602.1 555 58.9
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 5.6e-170 601.7 538 56.7
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 7.4e-170 601.3 536 57.6
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 6.9e-168 594.7 544 57.0
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 7.6e-167 591.3 531 58.6
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.4e-165 587.0 547 56.1
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 3.2e-165 585.9 539 55.5
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 1.9e-162 576.6 536 56.3
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 3.3e-162 575.9 536 56.0
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.3e-161 573.9 539 55.5
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 8.1e-161 571.2 540 56.1
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 1.1e-160 570.9 538 54.5
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 3.1e-160 569.3 536 55.6
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 2.0e-159 566.6 538 54.6
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 3.4e-159 565.8 534 56.9
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 7.6e-159 564.7 538 55.9
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.3e-158 563.9 546 54.6
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 5.5e-157 558.5 537 55.1
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 7.1e-157 558.1 554 52.9
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 2.1e-156 556.6 543 52.5
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 2.3e-155 553.1 539 53.1
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 5.1e-155 552.0 554 53.4
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 8.7e-155 551.2 548 54.0
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 1.6e-153 547.0 557 53.0
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 8.2e-153 544.7 539 53.1
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.8e-152 543.5 543 52.1
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 6.9e-152 541.6 542 53.5
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 5.9e-151 538.5 542 51.7
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.1e-149 534.3 538 52.4
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 1.4e-149 533.9 557 52.1
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 5.5e-149 531.9 544 50.6
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 9.3e-149 531.2 544 50.7
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 1.9e-146 523.5 538 50.7
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.9e-146 523.5 562 50.2
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 1.6e-145 520.4 540 50.4
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 5.3e-144 515.4 541 51.8
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 9.1e-144 514.6 535 52.7
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.3e-142 510.8 542 48.7
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 2.9e-142 509.6 539 49.2
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.1e-141 507.7 536 50.4
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.2e-140 504.2 541 48.8
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 7.9e-140 501.5 543 47.9
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 7.9e-140 501.5 540 49.4
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 3.9e-139 499.2 539 47.5
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 5.1e-139 498.8 539 47.5
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 2.0e-138 496.9 537 52.0
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.7e-137 493.8 542 48.0
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 2.8e-137 493.0 553 49.4
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 6.3e-137 491.9 541 48.6
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.1e-136 491.1 540 48.1
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 1.4e-136 490.7 541 48.4
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 4.1e-136 489.2 540 47.8
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 9.1e-136 488.0 541 47.5
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.2e-135 487.6 540 47.8
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 2.0e-135 486.9 545 48.4
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 2.0e-135 486.9 533 49.0
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.3e-134 484.2 535 50.5
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 2.9e-134 483.0 541 47.5
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 2.9e-134 483.0 527 50.1
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 6.5e-134 481.9 527 50.9
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.4e-133 480.7 536 47.2
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 2.0e-130 470.3 561 46.3
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.7e-129 467.2 481 52.2
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 6.1e-124 448.7 543 46.0
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 8.8e-123 444.9 544 45.6
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.8e-120 437.2 494 49.0
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 3.8e-118 429.5 577 43.3
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-117 427.9 522 45.8
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.4e-115 421.0 538 45.9
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 2.8e-113 413.3 545 44.6
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 1.1e-112 411.4 551 45.0
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.0e-110 404.8 539 43.6
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 4.7e-108 396.0 540 41.9
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 1.8e-107 394.0 542 41.3
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 1.5e-106 391.0 541 40.7
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 4.9e-105 386.0 418 48.8
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.2e-104 381.7 521 42.8
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 2.3e-102 377.1 528 39.8
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 4.4e-90 336.3 547 38.9
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 8.3e-89 332.0 576 38.0
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.9e-88 330.9 529 39.9
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 1.3e-86 324.7 485 40.4
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-86 323.6 529 39.5
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.4e-80 303.9 540 37.2
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.7e-76 289.7 518 34.9
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 4.7e-76 289.7 143 96.5
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.9e-74 282.0 487 37.8
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-73 280.8 487 38.0
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.1e-68 264.2 153 81.0
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.4e-64 251.5 540 33.0
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.6e-58 229.2 483 35.0
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 7.6e-58 229.2 483 35.0
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-50 204.1 384 34.9
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.7e-49 201.4 270 44.1
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 9.3e-48 195.7 317 40.1
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 3.3e-45 187.2 172 55.8
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.5e-40 169.9 515 27.2
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 4.6e-39 166.8 498 28.1
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.9e-37 161.4 541 29.4
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 5.0e-33 146.7 447 27.5
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 7.9e-31 139.4 503 25.6
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 3.0e-30 137.5 469 27.1
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 2.1e-23 114.8 98 60.2
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 6.1e-23 113.2 447 21.7
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.0e-22 110.9 306 30.1
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.5e-18 98.6 68 69.1
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 2.9e-17 94.4 57 80.7
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 2.1e-15 88.2 117 40.2
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 8.0e-15 86.3 196 33.2
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 1.4e-14 85.5 58 65.5
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 5.2e-14 83.6 121 35.5
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 7.4e-13 79.7 182 28.0
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 2.2e-12 78.2 133 34.6
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 2.8e-12 77.8 180 28.9
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.2e-12 76.3 82 48.8
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.2e-10 72.4 408 21.1
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 2.5e-08 64.7 61 42.6
Dinv07569 Davidia involucrata HOM05D032653 ORTHO05D005678 5.2e-06 57.0 129 30.2


User provided reference genes

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