Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G135600 Prunus persica HOM05D005443 ORTHO05D009021 2.2e-149 532.3 275 100.0
MD09G1249200 Malus domestica HOM05D005443 ORTHO05D009021 8.0e-112 407.5 278 79.5
FAN02G0200 Fragaria x ananassa HOM05D005443 ORTHO05D009021 1.4e-95 353.6 274 71.2
FvH4_6g26140 Fragaria vesca HOM05D005443 ORTHO05D009021 1.8e-95 353.2 270 71.9
RcHm_v2.0_Chr2g0126191 Rosa chinensis HOM05D005443 ORTHO05D009021 1.2e-94 350.5 276 70.7
Haze_13148 Corylus avellana HOM05D005443 ORTHO05D009021 2.3e-90 336.3 259 68.0
Cfa014595 Carpinus fangiana HOM05D005443 ORTHO05D009021 2.9e-85 319.3 259 66.4
TAR629G1996 Trochodendron aralioides HOM05D005443 ORTHO05D009021 1.2e-80 303.9 261 62.8
GSVIVG01020531001 Vitis vinifera HOM05D005443 ORTHO05D009021 6.2e-80 301.6 264 61.4
Sabra19G0111200 Salix brachista HOM05D005443 ORTHO05D009021 2.3e-79 299.7 243 61.3
CiPaw.04G125200 Carya illinoinensis HOM05D005443 ORTHO05D009021 4.9e-77 292.0 241 63.5
PGR042G2153 Punica granatum HOM05D005443 ORTHO05D009021 1.3e-74 283.9 240 61.7
Eucgr.A01810 Eucalyptus grandis HOM05D005443 ORTHO05D009021 5.6e-73 278.5 226 65.0
Hma1.2p1_1201F.1_g266680 Hydrangea macrophylla HOM05D005443 ORTHO05D009021 3.6e-72 275.8 261 58.6
CANSAT78G0275 Cannabis sativa HOM05D005443 ORTHO05D009021 1.1e-71 274.2 251 60.6
ClCG07G002990 Citrullus lanatus HOM05D000092 ORTHO05D009021 1.1e-71 274.2 225 63.6
CSS0011007 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 1.8e-71 273.5 234 62.0
CSS0037968 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 1.8e-71 273.5 234 62.0
Actinidia11040 Actinidia chinensis HOM05D005443 ORTHO05D009021 4.0e-71 272.3 263 57.8
Duzib052G1076 Durio zibethinus HOM05D005443 ORTHO05D009021 8.9e-71 271.2 251 58.2
Manes.12G087400 Manihot esculenta HOM05D005443 ORTHO05D009021 3.4e-70 269.2 246 59.3
Thecc.02G178000 Theobroma cacao HOM05D005443 ORTHO05D009021 4.4e-70 268.9 253 57.7
Gorai.013G075400 Gossypium raimondii HOM05D005443 ORTHO05D009021 3.8e-69 265.8 256 56.6
Gohir.D13G066100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 1.1e-68 264.2 256 56.6
Hma1.2p1_1201F.1_g266690 Hydrangea macrophylla HOM05D005443 ORTHO05D009021 4.2e-68 262.3 202 65.8
Sabra19G0112500 Salix brachista HOM05D005443 ORTHO05D009021 1.2e-67 260.8 318 46.2
Rhsim06G0144000 Rhododendron simsii HOM05D005443 ORTHO05D009021 1.6e-67 260.4 233 59.7
Gohir.A13G055900 Gossypium hirsutum HOM05D005443 ORTHO05D009021 6.0e-67 258.5 249 56.2
TWI75G0884 Tripterygium wilfordii HOM05D005443 ORTHO05D009021 1.3e-66 257.3 265 55.8
Glyma.06G293500 Glycine max HOM05D005443 ORTHO05D009021 7.3e-65 251.5 227 58.6
MBI18_g16995_MAGBIO Magnolia biondii HOM05D005443 ORTHO05D009021 4.8e-64 248.8 256 54.7
Migut.H01082 Erythranthe guttata HOM05D005443 ORTHO05D009021 2.4e-63 246.5 243 58.0
VMungo1127G1015 Vigna mungo HOM05D005443 ORTHO05D009021 5.3e-63 245.4 242 56.6
PGSC0003DMG400018348 Solanum tuberosum HOM05D005443 ORTHO05D009021 6.9e-63 245.0 212 59.0
Dinv23652 Davidia involucrata HOM05D005443 ORTHO05D009021 9.0e-63 244.6 178 70.8
Cfa014602 Carpinus fangiana HOM05D005443 ORTHO05D009021 3.4e-62 242.7 184 70.7
Phvul.011G114600 Phaseolus vulgaris HOM05D005443 ORTHO05D009021 4.4e-62 242.3 239 57.7
SalBow7G4211 Salvia bowleyana HOM05D005443 ORTHO05D009021 9.9e-62 241.1 237 55.3
Sc21g0002690 Simmondsia chinensis HOM05D005443 ORTHO05D009021 9.9e-62 241.1 254 52.4
SalBow7G3189 Salvia bowleyana HOM05D005443 ORTHO05D009021 1.7e-61 240.4 228 56.1
Lj3g0013365 Lotus japonicus HOM05D005443 ORTHO05D009021 2.9e-61 239.6 252 54.8
vmacro12294 Vaccinium macrocarpon HOM05D005443 ORTHO05D009021 6.4e-61 238.4 226 57.5
Cc05_g07040 Coffea canephora HOM05D005443 ORTHO05D009021 2.4e-60 236.5 250 53.2
Medtr0096s0020 Medicago truncatula HOM05D005443 ORTHO05D009021 1.7e-58 230.3 227 55.1
CAN.G248.23 Capsicum annuum HOM05D005443 ORTHO05D009021 6.6e-58 228.4 183 60.7
Cpa.g.sc34.150 Carica papaya HOM05D005443 ORTHO05D009021 4.3e-57 225.7 215 58.6
QL08p038456 Quercus lobata HOM05D005443 ORTHO05D009021 5.6e-57 225.3 185 62.7
arahy.Tifrunner.gnm1.ann1.Y6HWTN Arachis hypogaea HOM05D005443 ORTHO05D009021 7.3e-57 224.9 213 55.9
Sed0001067 Sechium edule HOM05D005443 ORTHO05D009021 7.3e-57 224.9 182 62.1
Lalb_Chr19g0135291 Lupinus albus HOM05D005443 ORTHO05D009021 2.8e-56 223.0 272 49.6
MELO3C024064.2 Cucumis melo HOM05D005443 ORTHO05D009021 2.4e-55 219.9 182 63.7
Ciclev10017817m.g Citrus clementina HOM05D005443 ORTHO05D009021 9.0e-55 218.0 193 59.6
Ah.01g015220 Amaranthus hybridus HOM05D005443 ORTHO05D009021 1.2e-54 217.6 238 47.9
Lsat_1_v5_gn_8_133320 Lactuca sativa HOM05D005443 ORTHO05D009021 2.6e-54 216.5 196 59.2
TPR.G21753 Trifolium pratense HOM05D005443 ORTHO05D009021 2.6e-54 216.5 190 60.0
AL3G53840 Arabidopsis lyrata HOM05D005443 ORTHO05D009021 3.4e-54 216.1 229 47.2
Carub.0003s3525 Capsella rubella HOM05D005443 ORTHO05D009021 4.5e-54 215.7 229 45.9
Sopen07g028070 Solanum pennellii HOM05D005443 ORTHO05D009021 4.5e-54 215.7 177 60.5
Peaxi162Scf00132g00415 Petunia axillaris HOM05D005443 ORTHO05D009021 7.6e-54 214.9 177 59.3
SGA_v2.0_scaffold109G31118 Striga asiatica HOM05D005443 ORTHO05D009021 7.6e-54 214.9 259 48.6
Thhalv10002053m.g Eutrema salsugineum HOM05D005443 ORTHO05D009021 9.9e-54 214.5 224 47.3
Oeu017969.1 Olea europaea HOM05D005443 ORTHO05D009021 1.3e-53 214.2 177 61.6
AT2G20725 Arabidopsis thaliana HOM05D005443 ORTHO05D009021 1.7e-53 213.8 233 46.4
HanXRQChr17g0553531 Helianthus annuus HOM05D005443 ORTHO05D009021 3.8e-53 212.6 266 48.1
Aa31LG8G17770 Aethionema arabicum HOM05D005443 ORTHO05D009021 3.2e-52 209.5 231 47.2
THA.LOC104814500 Tarenaya hassleriana HOM05D005443 ORTHO05D009021 4.2e-52 209.1 260 45.8
BcaB03g16866 Brassica carinata HOM05D005443 ORTHO05D009021 9.3e-52 208.0 242 45.9
Aqoxy1G02515 Aquilegia oxysepala HOM05D005443 ORTHO05D009021 6.7e-50 201.8 242 49.2
BraA07t27796Z Brassica rapa HOM05D005443 ORTHO05D009021 1.9e-49 200.3 266 43.2
Sp3g33980 Schrenkiella parvula HOM05D005443 ORTHO05D009021 2.5e-49 199.9 214 46.3
Potri.019G101100 Populus trichocarpa HOM05D005443 ORTHO05D009021 5.6e-49 198.7 146 67.8
A07p00040 Brassica napus HOM05D005443 ORTHO05D009021 7.4e-49 198.4 214 47.7
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 3.7e-48 196.1 197 50.8
HPP92_025995 Vanilla planifolia HOM05D005443 ORTHO05D009021 8.1e-48 194.9 245 46.9
PSO675G8511 Papaver somniferum HOM05D005443 ORTHO05D009021 5.3e-47 192.2 218 51.8
BolC7t40469H Brassica oleracea HOM05D005443 ORTHO05D009021 6.9e-47 191.8 262 42.7
C07p00180 Brassica napus HOM05D005443 ORTHO05D009021 1.2e-46 191.0 261 42.9
CsaV3_7G024480 Cucumis sativus L. HOM05D005443 ORTHO05D009021 6.0e-43 178.7 176 53.4
Atru.chr6.3005 Acer truncatum HOM05D005443 ORTHO05D009021 9.6e-41 171.4 141 64.5
COL.COLO4_07390 Corchorus olitorius HOM05D005443 ORTHO05D009021 4.8e-40 169.1 268 39.6
Gohir.D10G119100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 1.8e-39 167.2 142 63.4
Nn1g04052 Nelumbo nucifera HOM05D005443 ORTHO05D009021 2.6e-38 163.3 149 59.7
Prupe.3G135800 Prunus persica HOM05D005443 ORTHO05D009021 2.6e-38 163.3 150 66.7
Os07g0457550 Oryza sativa ssp. japonica HOM05D005443 ORTHO05D009021 1.3e-37 161.0 193 44.6
BcaC06g36763 Brassica carinata HOM05D005443 ORTHO05D009021 1.7e-37 160.6 177 48.0
BcaC06g36764 Brassica carinata HOM05D005443 ORTHO05D009021 1.7e-37 160.6 177 48.0
unitig_62.g23169 Utricularia gibba HOM05D005443 ORTHO05D009021 2.2e-37 160.2 246 43.1
Nitab4.5_0002526g0090 Nicotiana tabacum HOM05D005443 ORTHO05D009021 8.4e-37 158.3 142 56.3
Nitab4.5_0000512g0150 Nicotiana tabacum HOM05D005443 ORTHO05D009021 1.1e-36 157.9 142 57.0
Atru.chr2.3463 Acer truncatum HOM05D005443 ORTHO05D009021 3.5e-35 152.9 117 64.1
EL10Ac9g20753 Beta vulgaris HOM05D005443 ORTHO05D009021 3.0e-34 149.8 145 53.8
Atru.chr2.3477 Acer truncatum HOM05D005443 ORTHO05D009021 5.9e-30 135.6 125 60.8
Pp3c3_11680 Physcomitrium patens HOM05D005443 ORTHO05D009021 1.7e-29 134.0 211 39.8
CARHR111400 Cardamine hirsuta HOM05D005443 ORTHO05D009021 8.5e-29 131.7 144 45.8
Glyma.12G111866 Glycine max HOM05D005443 ORTHO05D009021 3.2e-28 129.8 114 56.1
ATR0680G174 Amborella trichopoda HOM05D005443 ORTHO05D009021 8.8e-26 121.7 130 50.0
Ca_25912_v3 Cicer arietinum L. HOM05D005443 ORTHO05D009021 8.8e-26 121.7 201 38.3
arahy.Tifrunner.gnm1.ann1.0NFG0V Arachis hypogaea HOM05D005443 ORTHO05D009021 4.3e-25 119.4 212 36.8
Mapoly0061s0039 Marchantia polymorpha HOM05D005443 ORTHO05D009021 1.5e-22 110.9 212 37.3
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 7.9e-19 98.6 242 33.9
Hund07945 Selenicereus undatus HOM05D005443 ORTHO05D009021 7.9e-19 98.6 167 38.3
MSTRG.12821 Avicennia marina HOM05D005443 ORTHO05D009021 4.8e-16 89.4 74 64.9
Zm00001eb306570 Zea mays HOM05D005443 ORTHO05D009021 6.3e-16 89.0 265 28.3
EL10Ac9g20752 Beta vulgaris HOM05D005443 ORTHO05D009021 3.1e-15 86.7 74 52.7
AagrBONN_evm.TU.Sc2ySwM_228.5557 Anthoceros agrestis HOM05D005443 ORTHO05D009021 3.8e-13 79.7 248 31.9
DCAR_016519 Daucus carota HOM05D005443 ORTHO05D009021 2.1e-11 73.9 92 45.7
DCAR_016518 Daucus carota HOM05D005443 ORTHO05D009021 1.8e-10 70.9 55 67.3
Prupe.4G275100 Prunus persica HOM05D005443 ORTHO05D009021 5.2e-10 69.3 42 85.7
ECA233G3734 Erigeron canadensis HOM05D005443 ORTHO05D009021 3.7e-08 63.2 82 45.1
SMO007G0001 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 1.1e-07 61.6 159 35.8
SMO200G0049 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 1.1e-07 61.6 159 35.8
CsaV3_5G032630 Cucumis sativus L. HOM05D004646 ORTHO05D005829 2.4e-07 60.5 277 28.2
HPP92_027580 Vanilla planifolia HOM05D004646 ORTHO05D005829 4.1e-07 59.7 209 30.6
MELO3C012090.2 Cucumis melo HOM05D004646 ORTHO05D005829 7.0e-07 58.9 277 27.4
ATR0564G518 Amborella trichopoda HOM05D004646 ORTHO05D005829 1.2e-06 58.2 213 28.6
CDE09G0693 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 1.2e-06 58.2 238 28.6
arahy.Tifrunner.gnm1.ann1.9WQ92K Arachis hypogaea HOM05D004646 ORTHO05D005829 2.7e-06 57.0 118 33.9
MSTRG.7804 Avicennia marina HOM05D004646 ORTHO05D005829 3.5e-06 56.6 247 27.9
Solyc05g007500.4 Solanum lycopersicum HOM05D004646 ORTHO05D005829 4.5e-06 56.2 202 26.2
Glyma.18G119400 Glycine max HOM05D004646 ORTHO05D005829 5.9e-06 55.8 232 26.7


User provided reference genes

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