Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G134200 Prunus persica HOM05D007676 ORTHO05D009456 8.4e-66 253.4 120 100.0
Prupe.2G079300 Prunus persica HOM05D007676 ORTHO05D009456 3.1e-44 181.8 116 75.9
RcHm_v2.0_Chr2g0127571 Rosa chinensis HOM05D007676 ORTHO05D009456 6.7e-39 164.1 120 66.7
MD17G1235700 Malus domestica HOM05D007676 ORTHO05D009456 1.1e-38 163.3 113 67.3
MD06G1108100 Malus domestica HOM05D007676 ORTHO05D009456 1.4e-28 129.8 111 57.7
RcHm_v2.0_Chr2g0127591 Rosa chinensis HOM05D007676 ORTHO05D009456 6.1e-24 114.4 109 49.5
FAN23G2239 Fragaria x ananassa HOM05D007676 ORTHO05D009456 6.3e-21 104.4 79 58.2
MD06G1108000 Malus domestica HOM05D007676 ORTHO05D009456 1.1e-20 103.6 112 47.3
Ciclev10018195m.g Citrus clementina HOM05D007676 ORTHO05D009456 1.4e-20 103.2 116 43.1
Manes.13G144000 Manihot esculenta HOM05D007676 ORTHO05D009456 9.1e-20 100.5 117 41.9
Sp2g09080 Schrenkiella parvula HOM05D007676 ORTHO05D009456 7.7e-19 97.4 91 48.4
Thhalv10003292m.g Eutrema salsugineum HOM05D007676 ORTHO05D009456 1.0e-18 97.1 91 47.3
Eucgr.A01837 Eucalyptus grandis HOM05D007676 ORTHO05D009456 1.3e-18 96.7 112 41.1
FAN12G2565 Fragaria x ananassa HOM05D007676 ORTHO05D009456 1.3e-18 96.7 105 41.0
FvH4_4g18380 Fragaria vesca HOM05D007676 ORTHO05D009456 1.7e-18 96.3 105 41.0
Thecc.02G183500 Theobroma cacao HOM05D007676 ORTHO05D009456 2.2e-18 95.9 116 41.4
AT5G44265 Arabidopsis thaliana HOM05D007676 ORTHO05D009456 6.5e-18 94.4 91 47.3
BcaC03g16646 Brassica carinata HOM05D007676 ORTHO05D009456 8.5e-18 94.0 91 47.3
A02p28290 Brassica napus HOM05D007676 ORTHO05D009456 8.5e-18 94.0 91 47.3
C02p44830 Brassica napus HOM05D007676 ORTHO05D009456 8.5e-18 94.0 91 47.3
BolC2t10523H Brassica oleracea HOM05D007676 ORTHO05D009456 8.5e-18 94.0 91 47.3
BraA02t07864Z Brassica rapa HOM05D007676 ORTHO05D009456 8.5e-18 94.0 91 47.3
CARHR178940 Cardamine hirsuta HOM05D007676 ORTHO05D009456 8.5e-18 94.0 91 48.4
AL8G15740 Arabidopsis lyrata HOM05D007676 ORTHO05D009456 1.1e-17 93.6 91 47.3
Carub.0008s0425 Capsella rubella HOM05D007676 ORTHO05D009456 1.5e-17 93.2 91 46.2
Aa31LG5G2990 Aethionema arabicum HOM05D007676 ORTHO05D009456 2.5e-17 92.4 118 39.0
Ciclev10017923m.g Citrus clementina HOM05D007676 ORTHO05D009456 2.5e-17 92.4 104 43.3
Gorai.002G020000 Gossypium raimondii HOM05D007676 ORTHO05D009456 5.5e-17 91.3 115 40.9
Gohir.D01G017700 Gossypium hirsutum HOM05D007676 ORTHO05D009456 9.4e-17 90.5 115 40.0
MD14G1128300 Malus domestica HOM05D007676 ORTHO05D009456 1.2e-16 90.1 86 52.3
Gohir.A01G019100 Gossypium hirsutum HOM05D007676 ORTHO05D009456 2.7e-16 89.0 115 40.9
FAN05G5516 Fragaria x ananassa HOM05D007676 ORTHO05D009456 3.6e-16 88.6 107 39.3
THA.LOC104801166 Tarenaya hassleriana HOM05D007676 ORTHO05D009456 1.4e-15 86.7 91 45.1
THA.LOC104804054 Tarenaya hassleriana HOM05D007676 ORTHO05D009456 1.2e-14 83.6 105 37.1
FvH4_6g26560 Fragaria vesca HOM05D007676 ORTHO05D009456 1.5e-14 83.2 105 38.1
Lalb_Chr14g0367061 Lupinus albus HOM05D007676 ORTHO05D009456 5.7e-14 81.3 116 37.1
Atru.chr6.2889 Acer truncatum HOM05D007676 ORTHO05D009456 7.5e-14 80.9 116 38.8
Atru.chr6.2952 Acer truncatum HOM05D007676 ORTHO05D009456 7.5e-14 80.9 116 38.8
TWI23G0504 Tripterygium wilfordii HOM05D007676 ORTHO05D009456 2.2e-13 79.3 103 39.8
Glyma.12G204200 Glycine max HOM05D007676 ORTHO05D009456 6.3e-13 77.8 96 45.8
Potri.007G138500 Populus trichocarpa HOM05D007676 ORTHO05D009456 6.3e-13 77.8 106 39.6
QL04p080567 Quercus lobata HOM05D007676 ORTHO05D009456 6.3e-13 77.8 111 42.3
arahy.Tifrunner.gnm1.ann1.SH5L4P Arachis hypogaea HOM05D029628 ORTHO05D009456 8.3e-13 77.4 113 37.2
Lj3g0021089 Lotus japonicus HOM05D007676 ORTHO05D009456 8.3e-13 77.4 102 42.2
arahy.Tifrunner.gnm1.ann1.0QPA7A Arachis hypogaea HOM05D029628 ORTHO05D009456 1.8e-12 76.3 113 37.2
arahy.Tifrunner.gnm1.ann1.W0QD2B Arachis hypogaea HOM05D029628 ORTHO05D009456 1.8e-12 76.3 113 37.2
Eucgr.A01836 Eucalyptus grandis HOM05D007676 ORTHO05D009456 2.4e-12 75.9 118 39.0
Phvul.005G103800 Phaseolus vulgaris HOM05D007676 ORTHO05D009456 3.1e-12 75.5 96 44.8
Migut.M00162 Erythranthe guttata HOM05D007676 ORTHO05D009456 4.1e-12 75.1 95 38.9
Manes.12G089100 Manihot esculenta HOM05D007676 ORTHO05D009456 4.1e-12 75.1 123 39.8
Potri.007G138400 Populus trichocarpa HOM05D007676 ORTHO05D009456 4.1e-12 75.1 94 39.4
Peaxi162Scf00008g00063 Petunia axillaris HOM05D007676 ORTHO05D009456 7.0e-12 74.3 122 37.7
Aa31LG7G7240 Aethionema arabicum HOM05D007676 ORTHO05D009456 9.1e-12 73.9 119 38.7
SalBow7G3232 Salvia bowleyana HOM05D007676 ORTHO05D009456 1.2e-11 73.6 90 42.2
SalBow7G3503 Salvia bowleyana HOM05D007676 ORTHO05D009456 1.2e-11 73.6 90 42.2
Aa31LG7G7230 Aethionema arabicum HOM05D007676 ORTHO05D009456 2.0e-11 72.8 126 32.5
FvH4_4g18390 Fragaria vesca HOM05D007676 ORTHO05D009456 2.0e-11 72.8 109 36.7
FAN12G3363 Fragaria x ananassa HOM05D007676 ORTHO05D009456 2.0e-11 72.8 109 36.7
FAN12G3844 Fragaria x ananassa HOM05D007676 ORTHO05D009456 2.0e-11 72.8 109 36.7
PGR042G0101 Punica granatum HOM05D007676 ORTHO05D009456 2.0e-11 72.8 90 42.2
TPR.G6389 Trifolium pratense HOM05D007676 ORTHO05D009456 2.0e-11 72.8 96 42.7
VMungo1080G1717 Vigna mungo HOM05D007676 ORTHO05D009456 2.0e-11 72.8 105 41.9
FAN07G1701 Fragaria x ananassa HOM05D007676 ORTHO05D009456 2.7e-11 72.4 109 36.7
CARHR236140 Cardamine hirsuta HOM05D007676 ORTHO05D009456 4.5e-11 71.6 116 33.6
Lalb_Chr14g0366911 Lupinus albus HOM05D007676 ORTHO05D009456 4.5e-11 71.6 96 42.7
Sp7g26360 Schrenkiella parvula HOM05D007676 ORTHO05D009456 5.9e-11 71.2 112 33.9
A03p58040 Brassica napus HOM05D000223 ORTHO05D000736 7.7e-11 70.9 119 33.6
BolC7t46093H Brassica oleracea HOM05D007676 ORTHO05D009456 7.7e-11 70.9 119 32.8
BraA03t14868Z Brassica rapa HOM05D007676 ORTHO05D009456 7.7e-11 70.9 119 33.6
Sabra07G0111500 Salix brachista HOM05D007676 ORTHO05D009456 7.7e-11 70.9 118 35.6
C07p56160 Brassica napus HOM05D000223 ORTHO05D000736 1.3e-10 70.1 119 33.6
Carub.0007s1233 Capsella rubella HOM05D007676 ORTHO05D009456 1.3e-10 70.1 120 35.0
CARHR236150 Cardamine hirsuta HOM05D007676 ORTHO05D009456 1.7e-10 69.7 122 33.6
Potri.017G013200 Populus trichocarpa HOM05D007676 ORTHO05D009456 1.7e-10 69.7 111 36.9
Lalb_Chr14g0366961 Lupinus albus HOM05D007676 ORTHO05D009456 2.9e-10 68.9 100 39.0
Sabra07G0111600 Salix brachista HOM05D007676 ORTHO05D009456 5.0e-10 68.2 107 37.4
AT4G28395 Arabidopsis thaliana HOM05D007676 ORTHO05D009456 8.6e-10 67.4 120 32.5
Aa31LG2G22250 Aethionema arabicum HOM05D007676 ORTHO05D009456 1.1e-09 67.0 94 35.1
Peaxi162Scf00050g00313 Petunia axillaris HOM05D007676 ORTHO05D009456 1.5e-09 66.6 86 40.7
AL7G24190 Arabidopsis lyrata HOM05D007676 ORTHO05D009456 2.5e-09 65.9 101 33.7
CAN.G209.28 Capsicum annuum HOM05D007676 ORTHO05D009456 4.2e-09 65.1 116 33.6
Lalb_Chr00c25g0407471 Lupinus albus HOM05D007676 ORTHO05D009456 7.2e-09 64.3 96 37.5
Carub.0007s1234 Capsella rubella HOM05D007676 ORTHO05D009456 1.2e-08 63.5 121 33.1
Potri.002G012300 Populus trichocarpa HOM05D007676 ORTHO05D009456 1.2e-08 63.5 109 31.2
Thhalv10026526m.g Eutrema salsugineum HOM05D007676 ORTHO05D009456 1.6e-08 63.2 100 33.0
Sabra02G0009600 Salix brachista HOM05D007676 ORTHO05D009456 2.1e-08 62.8 90 33.3
Atru.chr6.2888 Acer truncatum HOM05D007676 ORTHO05D009456 4.7e-08 61.6 73 39.7
Medtr2g090350 Medicago truncatula HOM05D007676 ORTHO05D009456 1.0e-07 60.5 113 37.2
Psat0s13238g0040 Pisum sativum HOM05D000275 ORTHO05D003378 1.4e-07 60.1 120 30.8
Lalb_Chr00c08g0404761 Lupinus albus HOM05D007676 ORTHO05D009456 1.8e-07 59.7 100 36.0
PGSC0003DMG400032819 Solanum tuberosum HOM05D007676 ORTHO05D009456 1.8e-07 59.7 86 37.2
Solyc10g008205.2 Solanum lycopersicum HOM05D007676 ORTHO05D009456 2.3e-07 59.3 88 36.4
Os11g0115100 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 3.0e-07 58.9 117 32.5
Os12g0114800 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 3.0e-07 58.9 117 32.5
Peaxi162Scf00059g00109 Petunia axillaris HOM05D007676 ORTHO05D009456 4.0e-07 58.5 89 31.5
PSO063G5480 Papaver somniferum HOM05D000275 ORTHO05D000181 7.5e-06 54.3 84 34.5
PGSC0003DMG400016102 Solanum tuberosum HOM05D000275 ORTHO05D000181 7.5e-06 54.3 111 33.3


User provided reference genes

Program Settings