Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G133200 Prunus persica HOM05D002136 ORTHO05D002145 6.2e-115 417.5 222 100.0
Prupe.3G132900 Prunus persica HOM05D002136 ORTHO05D002145 8.3e-67 257.7 407 45.2
MD09G1242900 Malus domestica HOM05D002136 ORTHO05D002145 2.3e-56 223.0 406 39.9
RcHm_v2.0_Chr2g0127351 Rosa chinensis HOM05D002136 ORTHO05D002145 6.4e-43 178.3 427 35.8
FAN09G2941 Fragaria x ananassa HOM05D002136 ORTHO05D002145 9.5e-39 164.5 428 36.0
QL08p039984 Quercus lobata HOM05D002136 ORTHO05D002145 6.2e-38 161.8 408 34.6
FAN05G3319 Fragaria x ananassa HOM05D002136 ORTHO05D002145 1.7e-35 153.7 445 33.3
CANSAT64G1773 Cannabis sativa HOM05D002136 ORTHO05D002145 3.5e-33 146.0 397 32.2
MD17G1235100 Malus domestica HOM05D002136 ORTHO05D002145 6.0e-33 145.2 114 71.1
FAN02G1860 Fragaria x ananassa HOM05D002136 ORTHO05D002145 1.9e-31 140.2 385 36.6
Duzib052G0640 Durio zibethinus HOM05D002136 ORTHO05D002145 5.6e-31 138.7 405 32.3
CiPaw.03G180600 Carya illinoinensis HOM05D002136 ORTHO05D002145 7.3e-31 138.3 397 33.0
TWI23G1175 Tripterygium wilfordii HOM05D002136 ORTHO05D002145 3.6e-30 136.0 400 31.2
Haze_13224 Corylus avellana HOM05D002136 ORTHO05D002145 1.4e-29 134.0 369 34.4
Atru.chr6.2940 Acer truncatum HOM05D002136 ORTHO05D002145 2.3e-29 133.3 310 36.1
FvH4_6g26620 Fragaria vesca HOM05D002136 ORTHO05D002145 2.3e-29 133.3 401 33.4
FAN14G1013 Fragaria x ananassa HOM05D002136 ORTHO05D002145 3.1e-29 132.9 387 35.9
Cfa014652 Carpinus fangiana HOM05D002136 ORTHO05D002145 5.2e-29 132.1 402 32.3
COL.COLO4_29169 Corchorus olitorius HOM05D002136 ORTHO05D002145 1.5e-28 130.6 282 38.3
Thecc.02G185000 Theobroma cacao HOM05D002136 ORTHO05D002145 9.9e-28 127.9 411 30.4
TWI59G0001 Tripterygium wilfordii HOM05D002136 ORTHO05D002145 1.3e-27 127.5 403 31.5
Sabra07G0110600 Salix brachista HOM05D002136 ORTHO05D002145 1.7e-27 127.1 363 34.2
Gohir.D02G178000 Gossypium hirsutum HOM05D002136 ORTHO05D002145 1.2e-25 120.9 400 31.2
Oeu022447.1 Olea europaea HOM05D002136 ORTHO05D002145 2.1e-25 120.2 390 32.3
Nitab4.5_0003076g0050 Nicotiana tabacum HOM05D002136 ORTHO05D002145 2.7e-25 119.8 87 66.7
Gohir.A03G155000 Gossypium hirsutum HOM05D002136 ORTHO05D002145 7.8e-25 118.2 408 31.1
GSVIVG01020595001 Vitis vinifera HOM05D002136 ORTHO05D002145 1.3e-24 117.5 90 66.7
Duzib132G0968 Durio zibethinus HOM05D002136 ORTHO05D002145 1.7e-24 117.1 87 65.5
Duzib132G1170 Durio zibethinus HOM05D002136 ORTHO05D002145 1.7e-24 117.1 87 65.5
Gorai.005G199800 Gossypium raimondii HOM05D002136 ORTHO05D002145 1.7e-24 117.1 409 30.6
Dinv10162 Davidia involucrata HOM05D002136 ORTHO05D002145 5.1e-24 115.5 414 30.0
Ciclev10015408m.g Citrus clementina HOM05D002136 ORTHO05D002145 1.1e-23 114.4 391 30.4
CSS0001471 Camellia sinensis var. sinensis HOM05D002136 ORTHO05D002145 1.5e-23 114.0 396 30.6
Actinidia11008 Actinidia chinensis HOM05D002136 ORTHO05D002145 2.5e-23 113.2 92 62.0
CsaV3_6G015270 Cucumis sativus L. HOM05D002136 ORTHO05D002145 5.6e-23 112.1 92 60.9
CAN.G209.16 Capsicum annuum HOM05D002136 ORTHO05D002145 1.2e-22 110.9 89 64.0
ClCG02G017910 Citrullus lanatus HOM05D002136 ORTHO05D002145 1.2e-22 110.9 399 29.3
PGSC0003DMG400009375 Solanum tuberosum HOM05D002136 ORTHO05D002145 2.1e-22 110.2 89 66.3
Cpa.g.sc83.84 Carica papaya HOM05D002136 ORTHO05D002145 2.8e-22 109.8 151 47.0
MELO3C013582.2 Cucumis melo HOM05D002136 ORTHO05D002145 3.6e-22 109.4 87 62.1
Aqoxy1G02270 Aquilegia oxysepala HOM05D002136 ORTHO05D002145 4.7e-22 109.0 100 60.0
Manes.13G142900 Manihot esculenta HOM05D002136 ORTHO05D002145 6.2e-22 108.6 407 30.7
Potri.017G014300 Populus trichocarpa HOM05D002136 ORTHO05D002145 6.2e-22 108.6 422 30.1
Eucgr.A01854 Eucalyptus grandis HOM05D002136 ORTHO05D002145 1.1e-21 107.8 93 60.2
Nitab4.5_0008993g0020 Nicotiana tabacum HOM05D002136 ORTHO05D002145 1.4e-21 107.5 95 58.9
TAR624G1372 Trochodendron aralioides HOM05D002136 ORTHO05D002145 1.8e-21 107.1 90 62.2
Sabra17G0011500 Salix brachista HOM05D002136 ORTHO05D002145 3.1e-21 106.3 79 68.4
vmacro12334 Vaccinium macrocarpon HOM05D002136 ORTHO05D002145 3.1e-21 106.3 85 67.1
Migut.M00140 Erythranthe guttata HOM05D002136 ORTHO05D002145 4.0e-21 105.9 96 57.3
PSO541G0651 Papaver somniferum HOM05D002136 ORTHO05D002145 5.2e-21 105.5 100 57.0
PGR042G3872 Punica granatum HOM05D002136 ORTHO05D002145 5.2e-21 105.5 393 28.5
Glyma.06G289900 Glycine max HOM05D002136 ORTHO05D002145 8.9e-21 104.8 89 57.3
HanXRQChr06g0171421 Helianthus annuus HOM05D002136 ORTHO05D002145 8.9e-21 104.8 92 62.0
VMungo1080G0383 Vigna mungo HOM05D002136 ORTHO05D002145 8.9e-21 104.8 89 55.1
Cc05_g07620 Coffea canephora HOM05D002136 ORTHO05D002145 1.2e-20 104.4 90 64.4
Eucgr.B01702 Eucalyptus grandis HOM05D002136 ORTHO05D002145 1.2e-20 104.4 92 56.5
Eucgr.H01835 Eucalyptus grandis HOM05D002136 ORTHO05D002145 1.2e-20 104.4 92 56.5
Eucgr.K03028 Eucalyptus grandis HOM05D002136 ORTHO05D002145 1.2e-20 104.4 92 56.5
Potri.007G137700 Populus trichocarpa HOM05D002136 ORTHO05D002145 1.2e-20 104.4 399 29.8
Solyc07g053700.4 Solanum lycopersicum HOM05D002136 ORTHO05D002145 1.2e-20 104.4 89 62.9
Sopen07g027670 Solanum pennellii HOM05D002136 ORTHO05D002145 1.2e-20 104.4 89 62.9
Peaxi162Scf00845g00225 Petunia axillaris HOM05D002136 ORTHO05D002145 1.5e-20 104.0 89 61.8
TPR.G9344 Trifolium pratense HOM05D002136 ORTHO05D002145 1.5e-20 104.0 91 56.0
TAR626G0309 Trochodendron aralioides HOM05D002136 ORTHO05D002145 1.5e-20 104.0 91 60.4
Nn1g06431 Nelumbo nucifera HOM05D002136 ORTHO05D002145 2.0e-20 103.6 89 59.6
Lj3g0002629 Lotus japonicus HOM05D002136 ORTHO05D002145 4.4e-20 102.4 94 54.3
Phvul.005G101200 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 7.6e-20 101.7 154 38.3
Medtr4g078740 Medicago truncatula HOM05D002136 ORTHO05D002145 9.9e-20 101.3 89 52.8
Glyma.12G206000 Glycine max HOM05D002136 ORTHO05D002145 2.9e-19 99.8 141 40.4
Lalb_Chr14g0367101 Lupinus albus HOM05D002136 ORTHO05D002145 2.9e-19 99.8 88 52.3
Glyma.13G294800 Glycine max HOM05D002136 ORTHO05D002145 3.8e-19 99.4 89 51.7
DCAR_021259 Daucus carota HOM05D002136 ORTHO05D002145 6.4e-19 98.6 97 59.8
Lsat_1_v5_gn_3_38820 Lactuca sativa HOM05D002136 ORTHO05D002145 6.4e-19 98.6 79 63.3
SalBow7G2611 Salvia bowleyana HOM05D002136 ORTHO05D002145 6.4e-19 98.6 88 56.8
Phvul.011G125100 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 1.1e-18 97.8 106 50.0
Ca_18926_v3 Cicer arietinum L. HOM05D002136 ORTHO05D002145 1.4e-18 97.4 89 51.7
Rhsim06G0138400 Rhododendron simsii HOM05D002136 ORTHO05D002145 1.4e-18 97.4 96 59.4
arahy.Tifrunner.gnm1.ann1.7D08F5 Arachis hypogaea HOM05D002136 ORTHO05D002145 1.9e-18 97.1 89 52.8
VMungo1127G0696 Vigna mungo HOM05D002136 ORTHO05D002145 2.4e-18 96.7 92 52.2
AT2G20590 Arabidopsis thaliana HOM05D002136 ORTHO05D002145 5.4e-18 95.5 95 54.7
Sc06g0009290 Simmondsia chinensis HOM05D002136 ORTHO05D002145 5.4e-18 95.5 78 66.7
Aa31LG8G17500 Aethionema arabicum HOM05D002136 ORTHO05D002145 7.1e-18 95.1 95 54.7
CARHR111170 Cardamine hirsuta HOM05D002136 ORTHO05D002145 9.3e-18 94.7 95 53.7
Lalb_Chr03g0029601 Lupinus albus HOM05D002136 ORTHO05D002145 1.2e-17 94.4 89 52.8
MBI06_g06467_MAGBIO Magnolia biondii HOM05D002136 ORTHO05D002145 1.2e-17 94.4 89 56.2
PSO210G2819 Papaver somniferum HOM05D002136 ORTHO05D002145 1.2e-17 94.4 95 52.6
PSO832G1271 Papaver somniferum HOM05D002136 ORTHO05D002145 1.2e-17 94.4 100 51.0
AL3G53650 Arabidopsis lyrata HOM05D002136 ORTHO05D002145 2.1e-17 93.6 95 53.7
TPR.G6453 Trifolium pratense HOM05D002136 ORTHO05D002145 2.1e-17 93.6 89 50.6
Actinidia11098 Actinidia chinensis HOM05D002136 ORTHO05D002145 3.5e-17 92.8 70 68.6
Carub.0003s3508 Capsella rubella HOM05D002136 ORTHO05D002145 3.5e-17 92.8 95 52.6
Ca_09438_v3 Cicer arietinum L. HOM05D002136 ORTHO05D002145 3.5e-17 92.8 89 51.7
HanXRQChr17g0541741 Helianthus annuus HOM05D002136 ORTHO05D002145 4.6e-17 92.4 92 57.6
Medtr2g090620 Medicago truncatula HOM05D002136 ORTHO05D002145 6.0e-17 92.0 111 43.2
BraA09t41267Z Brassica rapa HOM05D002136 ORTHO05D002145 7.8e-17 91.7 87 56.3
SGA_v2.0_scaffold70G23498 Striga asiatica HOM05D002136 ORTHO05D002145 7.8e-17 91.7 89 57.3
AT4G28430 Arabidopsis thaliana HOM05D002136 ORTHO05D002145 1.0e-16 91.3 87 51.7
EL10Ac6g14117 Beta vulgaris HOM05D002136 ORTHO05D002145 1.0e-16 91.3 77 64.9
ECA246G3173 Erigeron canadensis HOM05D002136 ORTHO05D002145 1.0e-16 91.3 92 57.6
Psat7g167920 Pisum sativum HOM05D002136 ORTHO05D002145 1.3e-16 90.9 88 48.9
Sp3g33840 Schrenkiella parvula HOM05D002136 ORTHO05D002145 1.7e-16 90.5 95 51.6
unitig_62.g23329 Utricularia gibba HOM05D002136 ORTHO05D002145 1.7e-16 90.5 95 51.6
A09p58810 Brassica napus HOM05D002136 ORTHO05D002145 3.0e-16 89.7 87 55.2
C08p42130 Brassica napus HOM05D002136 ORTHO05D002145 3.0e-16 89.7 87 55.2
BolC8t51773H Brassica oleracea HOM05D002136 ORTHO05D002145 3.0e-16 89.7 87 55.2
arahy.Tifrunner.gnm1.ann1.LGR7RE Arachis hypogaea HOM05D002136 ORTHO05D002145 3.9e-16 89.4 89 47.2
Lj3g0024162 Lotus japonicus HOM05D002136 ORTHO05D002145 5.1e-16 89.0 79 54.4
Aa31LG2G21980 Aethionema arabicum HOM05D002136 ORTHO05D002145 6.6e-16 88.6 87 52.9
BcaC07g41204 Brassica carinata HOM05D002136 ORTHO05D002145 6.6e-16 88.6 87 54.0
BcaC09g51645 Brassica carinata HOM05D002136 ORTHO05D002145 6.6e-16 88.6 101 45.5
C01p11060 Brassica napus HOM05D002136 ORTHO05D002145 6.6e-16 88.6 101 45.5
Thhalv10001984m.g Eutrema salsugineum HOM05D002136 ORTHO05D002145 6.6e-16 88.6 95 53.7
BcaB08g34919 Brassica carinata HOM05D002136 ORTHO05D002145 1.1e-15 87.8 87 54.0
THA.LOC104814507 Tarenaya hassleriana HOM05D002136 ORTHO05D002145 1.1e-15 87.8 100 48.0
arahy.Tifrunner.gnm1.ann1.M4PPZI Arachis hypogaea HOM05D002136 ORTHO05D002145 1.5e-15 87.4 89 46.1
A01p09510 Brassica napus HOM05D002136 ORTHO05D002145 1.5e-15 87.4 87 50.6
Carub.0007s1227 Capsella rubella HOM05D002136 ORTHO05D002145 1.5e-15 87.4 95 46.3
Ah.04g160440 Amaranthus hybridus HOM05D002136 ORTHO05D002145 1.9e-15 87.0 77 62.3
CARHR236200 Cardamine hirsuta HOM05D002136 ORTHO05D002145 1.9e-15 87.0 95 46.3
Lalb_Chr22g0356661 Lupinus albus HOM05D002136 ORTHO05D002145 3.3e-15 86.3 74 58.1
ATR0602G242 Amborella trichopoda HOM05D002136 ORTHO05D002145 5.6e-15 85.5 75 57.3
BolC1t01068H Brassica oleracea HOM05D002136 ORTHO05D002145 1.3e-14 84.3 87 49.4
Sp7g26410 Schrenkiella parvula HOM05D002136 ORTHO05D002145 1.3e-14 84.3 89 48.3
THA.LOC104824691 Tarenaya hassleriana HOM05D002136 ORTHO05D002145 1.3e-14 84.3 87 49.4
BraA01t00893Z Brassica rapa HOM05D002136 ORTHO05D002145 1.6e-14 84.0 87 49.4
Os02g0302900 Oryza sativa ssp. japonica HOM05D002136 ORTHO05D002145 3.6e-14 82.8 90 53.3
Sed0003676 Sechium edule HOM05D002136 ORTHO05D002145 1.1e-13 81.3 64 60.9
BcaNung01567 Brassica carinata HOM05D002136 ORTHO05D002145 3.1e-13 79.7 77 50.6
Psat5g273160 Pisum sativum HOM05D002136 ORTHO05D002145 6.9e-13 78.6 64 59.4
Nn1g04212 Nelumbo nucifera HOM05D002136 ORTHO05D002145 2.6e-12 76.6 123 48.8
AL7G24140 Arabidopsis lyrata HOM05D002136 ORTHO05D002145 5.8e-12 75.5 75 50.7
Dinv06865 Davidia involucrata HOM05D002136 ORTHO05D002145 1.3e-11 74.3 66 57.6
Lj8A108T65 Lonicera japonica HOM05D002136 ORTHO05D002145 2.2e-11 73.6 71 57.7
Zm00001eb203140 Zea mays HOM05D002136 ORTHO05D002145 1.4e-10 70.9 109 39.4
HPP92_021669 Vanilla planifolia HOM05D002136 ORTHO05D002145 5.4e-10 68.9 79 44.3
SEGI_31990 Sequoiadendron giganteum HOM05D002136 ORTHO05D002145 4.6e-09 65.9 96 41.7
ATR0739G045 Amborella trichopoda HOM05D002136 ORTHO05D002145 6.0e-09 65.5 105 41.0
Lalb_Chr11g0072721 Lupinus albus HOM05D002136 ORTHO05D002145 2.3e-08 63.5 101 38.6
AUR62036047 Chenopodium quinoa HOM05D002136 ORTHO05D002145 6.7e-08 62.0 62 54.8
VMungo1080G0769 Vigna mungo HOM05D002136 ORTHO05D002145 6.7e-08 62.0 116 34.5
AUR62038980 Chenopodium quinoa HOM05D002136 ORTHO05D002145 1.5e-07 60.8 112 44.6
Lj3g0013195 Lotus japonicus HOM05D002136 ORTHO05D002145 3.3e-07 59.7 40 62.5
Aqoxy6G02864 Aquilegia oxysepala HOM05D002136 ORTHO05D002145 4.3e-07 59.3 112 33.0
Lalb_Chr08g0234111 Lupinus albus HOM05D002136 ORTHO05D002145 4.3e-07 59.3 104 37.5
TAR636G1536 Trochodendron aralioides HOM05D002136 ORTHO05D002145 5.6e-07 58.9 100 37.0
Eucgr.G02883 Eucalyptus grandis HOM05D002136 ORTHO05D002145 9.6e-07 58.2 89 39.3
Nn1g06026 Nelumbo nucifera HOM05D002136 ORTHO05D002145 9.6e-07 58.2 105 38.1
Phvul.009G206800 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 9.6e-07 58.2 113 36.3
CANSAT11G0512 Cannabis sativa HOM05D002136 ORTHO05D002145 1.3e-06 57.8 120 34.2
Atru.chr7.100 Acer truncatum HOM05D002136 ORTHO05D002145 2.1e-06 57.0 107 37.4
MBI14_g24800_MAGBIO Magnolia biondii HOM05D002136 ORTHO05D002145 2.1e-06 57.0 102 37.3
Lj6g0008983 Lotus japonicus HOM05D002136 ORTHO05D002145 2.8e-06 56.6 114 35.1
SEGI_08782 Sequoiadendron giganteum HOM05D002136 ORTHO05D002145 2.8e-06 56.6 87 41.4
Glyma.17G074600 Glycine max HOM05D002136 ORTHO05D002145 3.6e-06 56.2 104 35.6
Lalb_Chr07g0179811 Lupinus albus HOM05D002136 ORTHO05D002145 3.6e-06 56.2 101 34.7
BcaB08g36161 Brassica carinata HOM05D002136 ORTHO05D002145 4.8e-06 55.8 105 35.2
Thecc.09G032000 Theobroma cacao HOM05D002136 ORTHO05D002145 4.8e-06 55.8 107 35.5
Phvul.005G040700 Phaseolus vulgaris HOM05D002136 ORTHO05D002145 6.2e-06 55.5 104 33.7
PSO339G5388 Papaver somniferum HOM05D002136 ORTHO05D002145 8.1e-06 55.1 105 36.2
RcHm_v2.0_Chr2g0085811 Rosa chinensis HOM05D002136 ORTHO05D002145 8.1e-06 55.1 105 37.1


User provided reference genes

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