Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 1.5e-120 436.4 254 100.0
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 4.1e-78 295.4 256 67.6
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 1.9e-59 233.4 258 58.1
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 1.2e-45 187.6 251 48.2
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.0e-45 185.3 247 48.2
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.0e-45 185.3 247 48.2
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 6.6e-44 181.8 251 46.6
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.2e-42 177.6 253 48.6
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 2.1e-42 176.8 253 47.0
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 2.8e-42 176.4 243 46.1
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 4.7e-42 175.6 265 46.4
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 1.5e-40 170.6 249 48.6
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 2.0e-40 170.2 243 49.0
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 2.2e-39 166.8 248 46.0
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 4.9e-39 165.6 252 43.3
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 6.4e-39 165.2 245 45.3
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 6.4e-39 165.2 251 50.2
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 8.3e-39 164.9 273 43.6
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 9.2e-38 161.4 252 45.6
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 2.1e-37 160.2 243 48.1
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 2.7e-37 159.8 247 45.7
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 4.6e-37 159.1 246 50.8
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 4.6e-37 159.1 251 49.4
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.0e-37 158.7 254 46.1
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 1.0e-36 157.9 247 48.6
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 6.6e-36 155.2 225 49.3
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 8.6e-36 154.8 248 41.5
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 1.1e-35 154.5 250 47.2
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 2.5e-35 153.3 249 42.6
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 2.5e-35 153.3 248 39.9
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 5.6e-35 152.1 247 47.4
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 7.3e-35 151.8 249 43.8
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.2e-34 151.0 269 41.6
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 2.8e-34 149.8 178 49.4
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 3.6e-34 149.4 255 48.2
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 4.7e-34 149.1 243 46.9
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 2.3e-33 146.7 254 40.9
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 3.1e-33 146.4 203 50.2
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 1.5e-32 144.1 243 46.5
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 2.6e-32 143.3 210 48.6
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 2.6e-32 143.3 210 48.6
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.7e-31 140.6 252 42.1
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.7e-31 140.6 246 42.7
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 3.8e-31 139.4 259 44.4
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 4.9e-31 139.0 209 42.6
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 6.4e-31 138.7 252 44.0
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 6.4e-31 138.7 245 43.7
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 8.4e-31 138.3 254 40.6
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 8.4e-31 138.3 245 44.5
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 1.1e-30 137.9 263 44.9
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 1.4e-30 137.5 212 43.4
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 1.9e-30 137.1 252 40.5
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 1.9e-30 137.1 168 48.2
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 1.9e-30 137.1 220 40.9
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 4.1e-30 136.0 257 43.2
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 4.1e-30 136.0 259 46.3
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 4.1e-30 136.0 257 39.7
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 7.1e-30 135.2 246 43.9
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 7.1e-30 135.2 245 42.0
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 1.2e-29 134.4 196 43.9
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 1.2e-29 134.4 247 41.7
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 1.6e-29 134.0 217 39.6
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.6e-29 134.0 240 43.3
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 2.1e-29 133.7 191 42.9
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 2.1e-29 133.7 254 44.9
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.7e-29 133.3 249 44.2
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 3.5e-29 132.9 128 53.1
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 3.5e-29 132.9 128 53.1
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 3.5e-29 132.9 128 53.1
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 3.5e-29 132.9 252 46.8
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.0e-29 132.1 245 43.7
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 1.0e-28 131.3 257 41.2
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.0e-28 131.3 247 41.7
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 1.7e-28 130.6 164 47.0
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 1.7e-28 130.6 164 47.0
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.7e-28 130.6 253 41.1
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.3e-28 130.2 251 40.6
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 2.3e-28 130.2 250 42.0
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 3.0e-28 129.8 201 42.8
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 3.0e-28 129.8 195 50.3
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 3.0e-28 129.8 258 38.0
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 6.6e-28 128.6 185 43.2
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.1e-27 127.9 169 46.2
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.1e-27 127.9 246 41.5
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 1.5e-27 127.5 163 57.1
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.5e-27 126.7 73 80.8
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 2.5e-27 126.7 195 38.5
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 5.6e-27 125.6 98 65.3
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 5.6e-27 125.6 124 55.6
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 5.6e-27 125.6 158 41.8
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 7.3e-27 125.2 250 41.6
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 7.3e-27 125.2 247 45.3
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 7.3e-27 125.2 80 73.8
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 9.6e-27 124.8 245 45.3
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 4.7e-26 122.5 80 68.8
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 8.1e-26 121.7 80 68.8
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.4e-25 120.9 245 42.4
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 1.8e-25 120.6 244 43.4
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 2.4e-25 120.2 210 41.0
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 3.1e-25 119.8 252 42.9
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 8.9e-25 118.2 177 42.4
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 8.9e-25 118.2 177 42.4
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 8.9e-25 118.2 261 41.8
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 8.9e-25 118.2 201 40.3
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.5e-24 117.5 247 44.9
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.0e-24 117.1 201 42.8
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 2.6e-24 116.7 80 67.5
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 3.4e-24 116.3 247 44.9
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 3.4e-24 116.3 250 39.2
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 3.4e-24 116.3 191 39.8
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 4.4e-24 115.9 80 68.8
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 5.8e-24 115.5 253 42.3
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 5.8e-24 115.5 253 42.7
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 7.6e-24 115.2 242 39.7
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 9.9e-24 114.8 195 39.5
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 1.7e-23 114.0 186 39.8
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.7e-23 114.0 243 42.0
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 3.8e-23 112.8 73 71.2
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.4e-23 112.1 243 39.9
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 1.4e-22 110.9 272 39.3
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 7.1e-22 108.6 227 40.1
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 9.3e-22 108.2 244 39.8
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 1.6e-21 107.5 67 74.6
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 1.6e-21 107.5 243 37.4
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 5.1e-20 102.4 249 38.6
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 5.1e-20 102.4 243 37.0
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 8.7e-20 101.7 75 61.3
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 8.7e-20 101.7 243 35.8
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.9e-19 100.5 245 36.7
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 2.5e-19 100.1 71 66.2
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 2.5e-19 100.1 78 57.7
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 7.3e-19 98.6 97 54.6
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 2.8e-18 96.7 97 53.6
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 3.6e-18 96.3 68 66.2
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 6.2e-18 95.5 87 56.3
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 3.1e-17 93.2 78 56.4
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 9.9e-16 88.2 84 50.0
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 2.1e-13 80.5 225 30.7
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 3.5e-13 79.7 75 54.7
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.1e-12 75.9 208 39.4
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 2.4e-06 57.0 42 64.3
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 3.2e-06 56.6 96 37.5


User provided reference genes

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