Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 9.0e-176 620.2 315 100.0
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 5.5e-133 478.0 358 74.0
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 1.4e-107 393.7 358 65.9
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 8.6e-102 374.4 351 62.7
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.1e-96 357.5 357 59.1
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.6e-95 353.6 357 58.8
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.6e-92 343.6 369 56.4
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 2.4e-88 329.7 354 55.4
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 4.0e-83 312.4 355 53.5
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 4.0e-83 312.4 353 54.1
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 8.9e-83 311.2 352 54.8
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 4.1e-80 302.4 365 50.7
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 3.9e-78 295.8 363 49.6
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 6.6e-78 295.0 354 51.1
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 2.8e-76 289.7 353 51.8
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 6.2e-76 288.5 348 52.9
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 8.1e-76 288.1 361 49.3
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.8e-75 287.0 349 50.7
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 4.4e-74 282.3 358 50.8
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 7.6e-74 281.6 351 49.6
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 9.9e-74 281.2 314 55.7
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 2.9e-73 279.6 348 49.1
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 6.4e-73 278.5 357 49.3
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 9.3e-72 274.6 349 51.0
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 1.5e-69 267.3 357 47.3
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 4.8e-68 262.3 347 47.8
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 6.2e-68 261.9 347 48.1
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 8.1e-68 261.5 346 47.7
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.8e-67 260.4 275 54.9
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 4.0e-67 259.2 346 46.8
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 5.3e-67 258.8 318 50.0
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 6.9e-67 258.5 357 46.2
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 6.9e-67 258.5 397 43.6
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 1.5e-66 257.3 331 48.3
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 4.5e-66 255.8 347 46.7
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 1.4e-64 250.8 355 45.4
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 1.9e-64 250.4 358 44.1
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 2.1e-63 246.9 345 45.2
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 3.5e-63 246.1 361 45.4
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 6.0e-63 245.4 357 47.1
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 7.9e-63 245.0 354 48.3
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 1.0e-62 244.6 344 46.5
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 1.3e-62 244.2 348 46.6
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 2.3e-62 243.4 350 46.9
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 6.7e-62 241.9 355 44.2
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 8.7e-62 241.5 353 43.9
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.1e-61 241.1 348 44.8
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 1.1e-61 241.1 356 44.9
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 1.9e-61 240.4 354 44.9
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 2.5e-61 240.0 352 44.6
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 2.5e-61 240.0 354 44.4
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 4.8e-60 235.7 360 41.9
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 2.4e-59 233.4 353 42.2
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 4.0e-59 232.6 358 43.9
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 4.0e-59 232.6 349 44.1
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 1.5e-58 230.7 259 52.9
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 4.5e-58 229.2 354 41.5
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 3.8e-57 226.1 368 44.6
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 1.4e-56 224.2 345 45.2
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 4.6e-55 219.2 345 42.3
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 3.3e-53 213.0 349 42.7
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 3.3e-53 213.0 357 41.2
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 4.3e-53 212.6 388 38.4
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 7.4e-53 211.8 390 40.0
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 1.3e-52 211.1 339 40.4
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 1.6e-52 210.7 342 42.4
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 3.7e-52 209.5 338 41.7
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 4.0e-51 206.1 310 41.3
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 5.8e-50 202.2 343 41.7
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 7.6e-50 201.8 341 41.9
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 1.0e-49 201.4 365 40.5
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 1.3e-49 201.1 341 41.3
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 1.7e-49 200.7 345 39.4
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 1.9e-48 197.2 327 41.6
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 5.5e-48 195.7 310 40.6
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 1.6e-47 194.1 344 39.8
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 2.1e-47 193.7 332 42.2
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 4.6e-47 192.6 337 40.7
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 6.0e-47 192.2 345 40.3
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 7.9e-47 191.8 340 39.1
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.3e-46 191.0 343 39.7
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 1.3e-46 191.0 342 40.4
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 3.0e-46 189.9 348 39.1
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 3.0e-46 189.9 345 39.4
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 3.9e-46 189.5 344 38.7
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 1.1e-45 188.0 344 39.0
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 1.6e-44 184.1 358 38.8
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 6.3e-44 182.2 341 38.4
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 2.4e-43 180.3 268 41.8
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 1.2e-42 177.9 344 38.7
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 2.0e-42 177.2 453 33.1
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 4.5e-42 176.0 290 39.0
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.5e-40 170.2 346 35.0
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 3.2e-40 169.9 308 39.6
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 7.2e-40 168.7 158 59.5
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 7.9e-39 165.2 342 36.0
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 1.0e-38 164.9 362 35.1
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 6.7e-38 162.2 340 34.7
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 8.8e-38 161.8 332 37.3
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.4e-35 154.5 207 49.3
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 1.4e-35 154.5 310 38.1
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 1.8e-35 154.1 309 35.9
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 9.1e-35 151.8 265 40.4
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 9.1e-35 151.8 317 36.6
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 2.2e-33 147.1 358 30.4
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 3.8e-33 146.4 350 32.3
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 1.6e-31 141.0 302 36.1
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.4e-30 137.9 309 32.4
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 1.1e-29 134.8 334 34.1
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 5.7e-29 132.5 158 49.4
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 1.7e-28 131.0 348 32.2
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 7.0e-27 125.6 211 39.8
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.5e-26 124.4 245 36.3
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 3.4e-26 123.2 264 36.4
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 3.4e-26 123.2 264 36.4
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 3.4e-26 123.2 264 36.4
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 6.1e-23 112.5 225 36.9
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 1.4e-22 111.3 89 62.9
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 1.1e-21 108.2 170 40.6
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 2.6e-21 107.1 253 34.8
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 6.3e-20 102.4 174 40.2
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 7.0e-19 99.0 244 30.3
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 2.0e-18 97.4 214 32.7
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 1.7e-17 94.4 299 29.1
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 3.8e-17 93.2 95 60.0
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 4.7e-15 86.3 181 35.9
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 6.1e-15 85.9 111 44.1
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 1.4e-14 84.7 91 54.9
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 8.8e-14 82.0 366 27.0
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 1.2e-13 81.6 143 38.5
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 6.5e-09 65.9 68 60.3
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 8.5e-09 65.5 66 51.5
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.9e-08 64.3 66 50.0
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 2.1e-07 60.8 177 29.4


User provided reference genes

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