Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 1.2e-167 593.2 309 100.0
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 6.5e-102 374.8 353 62.0
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 2.7e-92 342.8 355 56.9
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.6e-89 333.6 314 62.7
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.4e-88 329.7 314 61.5
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 3.2e-85 319.3 355 55.8
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 5.7e-82 308.5 351 53.8
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.8e-80 303.5 358 54.7
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 4.4e-74 282.3 354 50.8
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 2.9e-70 269.6 380 47.9
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.0e-66 256.9 348 46.3
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 9.7e-66 254.6 359 47.4
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 3.7e-65 252.7 354 46.9
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.6e-63 247.3 349 47.9
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 2.0e-58 230.3 351 43.3
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 5.7e-58 228.8 356 43.0
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 7.5e-58 228.4 354 44.1
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.3e-57 227.6 348 45.7
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.7e-55 219.9 354 43.2
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 5.9e-55 218.8 356 44.4
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 7.7e-55 218.4 357 42.3
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 3.2e-53 213.0 310 45.2
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 5.5e-53 212.2 353 40.5
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 2.1e-52 210.3 362 41.7
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 3.6e-52 209.5 353 41.9
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 8.0e-52 208.4 354 41.0
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 6.8e-51 205.3 353 41.9
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 8.8e-51 204.9 357 42.3
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.2e-50 204.5 352 41.5
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 2.0e-50 203.8 355 39.7
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 2.6e-50 203.4 357 43.1
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 9.8e-50 201.4 353 41.4
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 4.9e-49 199.1 395 35.9
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 3.1e-48 196.4 358 39.7
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 4.1e-48 196.1 309 41.4
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 7.7e-47 191.8 324 43.2
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.3e-46 191.0 355 40.8
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 1.7e-46 190.7 352 40.9
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.1e-45 188.0 355 39.7
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 9.5e-45 184.9 353 40.2
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.6e-44 184.1 347 39.2
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 2.1e-44 183.7 325 42.5
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 3.6e-44 183.0 313 41.5
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 6.1e-44 182.2 328 41.5
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 8.0e-44 181.8 356 38.5
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 1.0e-43 181.4 354 37.6
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 4.0e-43 179.5 214 49.1
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.2e-42 177.9 308 41.9
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 2.0e-42 177.2 352 37.8
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 3.4e-42 176.4 322 40.1
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 5.7e-42 175.6 348 37.1
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 9.8e-42 174.9 320 39.7
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 9.8e-42 174.9 320 39.7
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 1.3e-41 174.5 346 38.4
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 1.3e-41 174.5 346 38.4
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.9e-41 172.6 346 37.9
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 4.9e-41 172.6 325 39.4
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 6.4e-41 172.2 346 37.6
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 6.4e-41 172.2 261 44.1
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 8.3e-41 171.8 326 39.6
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.4e-40 171.0 327 41.3
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 2.4e-40 170.2 278 41.4
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 3.2e-40 169.9 362 36.7
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 3.2e-40 169.9 194 48.5
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 9.2e-40 168.3 336 39.6
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 9.2e-40 168.3 322 38.5
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 2.0e-39 167.2 273 41.4
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 2.0e-39 167.2 361 38.0
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 2.0e-39 167.2 326 38.3
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 5.9e-39 165.6 270 41.1
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 5.9e-39 165.6 356 36.0
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.0e-38 164.9 326 39.3
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 1.3e-38 164.5 327 36.1
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.7e-38 164.1 354 36.2
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 2.3e-38 163.7 353 36.0
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 3.0e-38 163.3 323 37.2
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.5e-37 161.0 365 34.8
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.5e-37 161.0 364 38.2
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 4.3e-37 159.5 231 44.2
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 4.7e-36 156.0 362 34.5
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 6.2e-36 155.6 304 37.8
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 6.2e-36 155.6 383 34.7
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.0e-35 154.8 352 33.0
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.4e-35 154.5 366 34.4
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 3.2e-32 143.3 225 40.4
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 1.2e-31 141.4 198 42.9
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 2.3e-30 137.1 257 36.6
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.6e-30 135.6 260 36.9
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 2.5e-29 133.7 286 36.4
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.5e-29 133.7 131 58.8
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.5e-29 133.7 202 40.6
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 4.7e-28 129.4 206 39.8
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 4.7e-28 129.4 268 33.6
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 6.2e-28 129.0 352 33.5
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 4.0e-27 126.3 149 50.3
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.2e-26 124.8 279 34.8
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.6e-26 123.6 283 34.3
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.6e-26 123.6 134 50.0
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 5.8e-26 122.5 372 31.7
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 9.8e-26 121.7 360 31.7
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 2.9e-25 120.2 159 44.0
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 4.9e-25 119.4 319 32.6
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 4.9e-25 119.4 282 34.0
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 6.4e-25 119.0 199 40.2
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 6.4e-25 119.0 240 36.2
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 3.2e-24 116.7 292 32.9
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.4e-24 115.9 209 41.1
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 2.3e-22 110.5 283 32.5
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 5.2e-19 99.4 329 33.4
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 8.9e-19 98.6 251 33.1
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 8.9e-19 98.6 209 35.4
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 2.6e-18 97.1 294 31.0
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 3.4e-18 96.7 82 63.4
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.6e-18 95.5 159 40.3
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.3e-17 94.7 200 34.0
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 1.3e-17 94.7 253 30.4
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.2e-17 94.0 163 38.7
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 4.9e-17 92.8 100 51.0
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 1.4e-16 91.3 310 29.4
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.9e-16 90.9 202 31.7
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.7e-14 84.3 274 31.0
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 2.3e-14 84.0 218 31.7
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 3.9e-14 83.2 76 60.5
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 5.1e-14 82.8 277 30.3
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 6.6e-14 82.4 283 30.0
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 8.6e-14 82.0 116 46.6
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.5e-13 80.5 336 29.2
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.4e-11 74.7 285 28.8
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 3.1e-11 73.6 197 31.0
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 2.6e-10 70.5 102 44.1
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 7.6e-10 68.9 100 43.0
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 7.6e-10 68.9 146 37.0
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 7.6e-10 68.9 98 41.8
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 9.9e-10 68.6 291 27.8
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 9.9e-10 68.6 232 29.3
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 9.9e-10 68.6 184 34.8
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 1.9e-08 64.3 319 26.6
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 5.4e-08 62.8 74 52.7
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 9.3e-08 62.0 188 31.4
RcHm_v2.0_Chr6g0263661 Rosa chinensis HOM05D004908 ORTHO05D006418 2.7e-07 60.5 46 63.0
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 2.3e-06 57.4 77 46.8


User provided reference genes

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