Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 2.3e-44 181.8 87 100.0
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.3e-31 139.4 87 82.8
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.3e-31 139.4 87 82.8
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.2e-31 138.7 87 80.5
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 2.9e-31 138.3 87 82.8
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 2.9e-31 138.3 87 81.6
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 3.7e-31 137.9 84 84.5
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 4.9e-31 137.5 87 81.6
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 4.9e-31 137.5 87 81.6
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 4.9e-31 137.5 87 81.6
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 6.4e-31 137.1 87 80.5
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 8.3e-31 136.7 84 83.3
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 8.3e-31 136.7 87 79.3
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.1e-30 136.3 87 78.2
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.1e-30 136.3 87 81.6
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.1e-30 136.3 87 81.6
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.1e-30 136.3 87 81.6
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 1.4e-30 136.0 87 80.5
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 1.4e-30 136.0 87 80.5
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.4e-30 136.0 87 79.3
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.9e-30 135.6 87 78.2
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.9e-30 135.6 87 79.3
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 2.4e-30 135.2 87 79.3
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 3.2e-30 134.8 87 80.5
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 4.1e-30 134.4 87 78.2
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 4.1e-30 134.4 87 79.3
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 5.4e-30 134.0 87 78.2
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 5.4e-30 134.0 87 79.3
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 5.4e-30 134.0 84 81.0
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 5.4e-30 134.0 84 81.0
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 7.0e-30 133.7 87 77.0
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 9.2e-30 133.3 87 78.2
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 9.2e-30 133.3 87 79.3
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 9.2e-30 133.3 87 77.0
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 1.2e-29 132.9 84 82.1
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 1.6e-29 132.5 84 79.8
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.6e-29 132.5 84 82.1
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.6e-29 132.5 87 78.2
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 1.6e-29 132.5 87 75.9
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 2.1e-29 132.1 107 66.4
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.1e-29 132.1 84 81.0
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.7e-29 131.7 84 81.0
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 2.7e-29 131.7 87 77.0
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 3.5e-29 131.3 87 77.0
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 3.5e-29 131.3 87 77.0
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 3.5e-29 131.3 87 77.0
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 3.5e-29 131.3 87 77.0
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 3.5e-29 131.3 87 77.0
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 4.6e-29 131.0 87 77.0
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 4.6e-29 131.0 84 79.8
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 6.0e-29 130.6 87 79.3
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 6.0e-29 130.6 87 77.0
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 7.8e-29 130.2 87 75.9
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 7.8e-29 130.2 84 78.6
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 7.8e-29 130.2 87 77.0
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 7.8e-29 130.2 87 75.9
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 7.8e-29 130.2 87 75.9
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 7.8e-29 130.2 87 75.9
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 7.8e-29 130.2 86 77.9
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 7.8e-29 130.2 84 79.8
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.3e-28 129.4 84 78.6
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.3e-28 129.4 87 75.9
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.7e-28 129.0 87 78.2
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.7e-28 129.0 87 77.0
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 2.3e-28 128.6 84 79.8
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 3.0e-28 128.3 87 74.7
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 3.9e-28 127.9 84 78.6
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 3.9e-28 127.9 87 75.9
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 3.9e-28 127.9 87 77.0
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 5.1e-28 127.5 84 78.6
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 5.1e-28 127.5 84 78.6
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 5.1e-28 127.5 87 75.9
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 5.1e-28 127.5 84 78.6
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 5.1e-28 127.5 84 77.4
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 5.1e-28 127.5 84 77.4
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 5.1e-28 127.5 84 78.6
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 5.1e-28 127.5 84 79.8
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 5.1e-28 127.5 87 75.9
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 5.1e-28 127.5 84 78.6
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 5.1e-28 127.5 87 75.9
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 6.6e-28 127.1 87 73.6
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 6.6e-28 127.1 87 74.7
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.1e-27 126.3 87 74.7
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.5e-27 125.9 87 74.7
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.9e-27 125.6 84 77.4
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.9e-27 125.6 84 77.4
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 1.9e-27 125.6 87 74.7
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 2.5e-27 125.2 84 77.4
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 2.5e-27 125.2 84 77.4
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 2.5e-27 125.2 87 73.6
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 7.3e-27 123.6 84 76.2
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 7.3e-27 123.6 84 76.2
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 7.3e-27 123.6 84 76.2
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 9.5e-27 123.2 84 76.2
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 9.5e-27 123.2 84 76.2
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 9.5e-27 123.2 84 76.2
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 9.5e-27 123.2 84 76.2
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.2e-26 122.9 87 72.4
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 6.2e-26 120.6 84 75.0
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.8e-24 114.0 87 66.7
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 9.9e-24 113.2 87 64.4
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 9.9e-24 113.2 77 76.6
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 1.7e-23 112.5 87 66.7
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.4e-22 109.4 77 72.7
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 5.4e-22 107.5 87 63.2
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 9.2e-22 106.7 86 62.8
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 9.2e-22 106.7 87 60.9
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 2.7e-21 105.1 87 62.1
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 4.6e-21 104.4 70 74.3
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 4.6e-21 104.4 70 74.3
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 1.7e-20 102.4 69 73.9
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.3e-20 102.1 87 58.6
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 9.5e-19 96.7 69 71.0
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.1e-18 95.5 87 56.3
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 2.8e-18 95.1 84 63.1
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 6.8e-17 90.5 69 68.1
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.5e-16 89.4 52 84.6
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 7.6e-16 87.0 50 86.0
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.7e-15 85.9 50 82.0
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 3.8e-15 84.7 50 80.0
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 3.8e-15 84.7 46 89.1
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 8.4e-15 83.6 47 85.1
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.9e-14 82.4 54 74.1
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 2.4e-14 82.0 88 51.1
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 4.2e-14 81.3 47 85.1
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.8e-13 77.0 87 48.3
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 1.0e-12 76.6 53 73.6
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.0e-12 75.1 97 46.4


User provided reference genes

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