Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 1.0e-75 286.6 139 100.0
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 1.4e-59 233.0 139 81.3
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 1.2e-58 229.9 142 79.6
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 2.2e-57 225.7 139 78.4
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 1.1e-56 223.4 139 78.4
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.1e-56 223.4 139 78.4
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 2.4e-56 222.2 142 77.5
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 4.1e-56 221.5 138 78.3
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 2.0e-55 219.2 138 78.3
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 1.7e-54 216.1 138 75.4
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 5.0e-54 214.5 138 77.5
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 6.6e-54 214.2 138 75.4
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 2.5e-53 212.2 138 74.6
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 3.3e-53 211.8 135 77.0
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 4.7e-52 208.0 138 73.2
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 1.4e-51 206.5 139 74.1
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.8e-51 206.1 138 73.2
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 2.3e-51 205.7 138 72.5
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 6.8e-51 204.1 138 71.7
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 8.9e-51 203.8 138 70.3
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 1.2e-50 203.4 138 71.0
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 1.2e-50 203.4 138 71.0
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 2.0e-50 202.6 138 71.0
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 2.0e-50 202.6 114 84.2
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 2.6e-50 202.2 134 75.4
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 3.4e-50 201.8 138 71.7
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 4.4e-50 201.4 138 69.6
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 4.4e-50 201.4 135 73.3
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 4.4e-50 201.4 138 71.0
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 7.5e-50 200.7 138 73.9
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.3e-49 199.9 138 71.0
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 1.3e-49 199.9 139 70.5
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 1.7e-49 199.5 139 71.2
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 1.7e-49 199.5 138 71.0
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 1.7e-49 199.5 138 73.2
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 2.2e-49 199.1 138 71.7
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 3.7e-49 198.4 139 69.8
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 4.9e-49 198.0 138 70.3
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 8.3e-49 197.2 136 72.1
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 1.1e-48 196.8 138 71.7
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 1.1e-48 196.8 138 68.1
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 1.1e-48 196.8 138 71.7
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 1.4e-48 196.4 138 71.0
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 1.8e-48 196.1 136 72.1
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 2.4e-48 195.7 138 70.3
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 2.4e-48 195.7 139 68.3
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 2.4e-48 195.7 139 68.3
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 2.4e-48 195.7 139 66.9
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 4.1e-48 194.9 139 65.5
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 7.0e-48 194.1 139 69.1
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 9.2e-48 193.7 135 68.1
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.6e-47 193.0 138 68.8
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 2.0e-47 192.6 139 68.3
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 3.5e-47 191.8 139 65.5
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 3.5e-47 191.8 138 70.3
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 4.6e-47 191.4 136 68.4
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 4.6e-47 191.4 138 71.7
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 4.6e-47 191.4 144 67.4
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 4.6e-47 191.4 138 68.1
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 4.6e-47 191.4 138 68.1
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 4.6e-47 191.4 138 65.9
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 5.9e-47 191.0 141 66.7
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 5.9e-47 191.0 138 70.3
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 5.9e-47 191.0 139 68.3
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 1.0e-46 190.3 138 68.8
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 1.7e-46 189.5 138 65.2
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 2.3e-46 189.1 136 67.6
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 2.3e-46 189.1 138 68.1
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 2.3e-46 189.1 136 67.6
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 3.9e-46 188.3 122 77.9
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 3.9e-46 188.3 138 65.9
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 1.1e-45 186.8 138 64.5
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 1.5e-45 186.4 136 67.6
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 1.5e-45 186.4 136 67.6
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 1.9e-45 186.0 136 64.0
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 4.3e-45 184.9 136 66.2
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 4.3e-45 184.9 136 66.9
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 5.6e-45 184.5 136 66.2
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 5.6e-45 184.5 136 66.2
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 7.3e-45 184.1 136 66.9
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 9.5e-45 183.7 136 66.2
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 1.6e-44 183.0 138 64.5
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 2.8e-44 182.2 136 65.4
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 2.8e-44 182.2 136 66.9
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 6.2e-44 181.0 136 64.7
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 6.2e-44 181.0 137 66.4
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 6.2e-44 181.0 136 64.7
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 8.0e-44 180.6 122 73.8
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 2.3e-43 179.1 136 66.9
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 3.1e-43 178.7 130 67.7
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 3.1e-43 178.7 130 67.7
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 8.9e-43 177.2 139 64.0
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 1.2e-42 176.8 136 64.0
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 1.2e-42 176.8 127 65.4
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 4.4e-42 174.9 139 63.3
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 4.9e-41 171.4 138 62.3
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 8.3e-41 170.6 110 70.9
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 1.1e-40 170.2 122 67.2
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 1.1e-40 170.2 138 64.5
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 2.4e-40 169.1 122 67.2
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 7.0e-40 167.5 124 68.5
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 7.0e-40 167.5 139 58.3
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.2e-39 166.8 107 73.8
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 3.5e-39 165.2 124 67.7
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 3.5e-39 165.2 124 67.7
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 4.6e-39 164.9 142 61.3
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 1.7e-38 162.9 108 70.4
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 3.0e-38 162.2 139 56.1
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 1.1e-37 160.2 138 58.7
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 9.5e-37 157.1 138 58.0
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 9.5e-37 157.1 124 62.9
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 6.2e-36 154.5 119 63.0
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 2.3e-35 152.5 127 61.4
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 2.1e-31 139.4 124 58.1
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 7.8e-31 137.5 118 52.5
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 7.8e-31 137.5 119 52.9
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 1.0e-30 137.1 103 61.2
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 3.0e-30 135.6 131 50.4
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 5.1e-30 134.8 117 53.8
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 6.6e-30 134.4 109 56.0
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 1.9e-29 132.9 82 72.0
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 9.5e-29 130.6 111 59.5
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 6.2e-28 127.9 98 69.4
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 4.0e-27 125.2 95 67.4
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 2.0e-26 122.9 94 61.7
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 5.8e-26 121.3 130 46.9
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 4.1e-24 115.2 89 64.0
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 3.5e-23 112.1 90 61.1
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 1.0e-22 110.5 110 45.5
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 3.0e-14 82.4 57 64.9
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 3.6e-12 75.5 90 48.9
CsaV3_7G018800 Cucumis sativus L. HOM05D006058 ORTHO05D000001 8.7e-06 54.3 43 55.8


User provided reference genes

Program Settings