Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 1.2e-29 132.5 64 100.0
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 6.6e-25 116.7 62 88.7
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 6.6e-25 116.7 64 82.8
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 3.3e-24 114.4 64 81.2
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 5.6e-24 113.6 64 84.4
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 7.3e-24 113.2 64 84.4
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 1.2e-23 112.5 64 79.7
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 2.1e-23 111.7 64 82.8
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 3.6e-23 110.9 64 81.2
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 4.7e-23 110.5 64 79.7
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.7e-23 110.5 64 79.7
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.7e-23 110.5 64 79.7
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 4.7e-23 110.5 64 79.7
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 6.1e-23 110.2 64 81.2
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 1.0e-22 109.4 64 81.2
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 2.3e-22 108.2 64 79.7
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 4.0e-22 107.5 64 78.1
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 4.0e-22 107.5 63 77.8
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 4.0e-22 107.5 63 77.8
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 5.2e-22 107.1 64 79.7
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 5.2e-22 107.1 64 79.7
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 6.8e-22 106.7 63 77.8
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 8.9e-22 106.3 64 78.1
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 8.9e-22 106.3 64 78.1
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 8.9e-22 106.3 64 78.1
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 1.5e-21 105.5 64 78.1
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 1.5e-21 105.5 64 78.1
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 2.0e-21 105.1 64 78.1
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 2.0e-21 105.1 64 81.2
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 2.6e-21 104.8 64 76.6
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 2.6e-21 104.8 63 74.6
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 2.6e-21 104.8 64 75.0
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 3.4e-21 104.4 64 75.0
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 3.4e-21 104.4 64 75.0
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 3.4e-21 104.4 64 75.0
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 3.4e-21 104.4 64 75.0
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 3.4e-21 104.4 64 78.1
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 5.7e-21 103.6 64 79.7
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 5.7e-21 103.6 64 79.7
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 7.5e-21 103.2 64 75.0
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 7.5e-21 103.2 64 76.6
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 9.8e-21 102.8 64 76.6
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 1.3e-20 102.4 64 76.6
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 1.7e-20 102.1 64 73.4
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.7e-20 102.1 62 74.2
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.7e-20 102.1 62 74.2
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 1.7e-20 102.1 64 78.1
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 1.7e-20 102.1 64 75.0
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 2.2e-20 101.7 64 71.9
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.9e-20 101.3 64 73.4
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.9e-20 101.3 64 73.4
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 3.7e-20 100.9 62 74.2
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 3.7e-20 100.9 58 81.0
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 6.4e-20 100.1 64 73.4
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 1.1e-19 99.4 64 71.9
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 1.1e-19 99.4 65 76.9
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 1.1e-19 99.4 64 68.8
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 1.4e-19 99.0 64 71.9
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 4.1e-19 97.4 64 71.9
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 2.0e-18 95.1 65 72.3
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.7e-18 94.7 62 71.0
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 3.5e-18 94.4 61 70.5
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 4.6e-18 94.0 62 71.0
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 4.6e-18 94.0 64 68.8
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 5.9e-18 93.6 79 60.8
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 3.0e-17 91.3 62 67.7
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 6.6e-17 90.1 62 69.4
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 8.6e-17 89.7 62 69.4
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 3.3e-16 87.8 60 68.3
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 5.6e-16 87.0 60 66.7
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 6.8e-14 80.1 43 86.0
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 1.2e-13 79.3 59 66.1
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 2.6e-13 78.2 43 83.7
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 3.7e-12 74.3 50 68.0
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 1.4e-11 72.4 44 75.0
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 3.2e-11 71.2 42 76.2
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 5.4e-11 70.5 44 70.5
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 7.0e-11 70.1 60 51.7
ECA236G4186 Erigeron canadensis HOM05D007316 ORTHO05D009393 9.2e-11 69.7 61 54.1
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.2e-10 69.3 44 70.5
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.2e-10 69.3 44 70.5
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.6e-10 68.9 48 64.6
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.6e-10 68.9 44 68.2
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.6e-10 68.9 44 68.2
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.6e-10 68.9 44 68.2
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 4.6e-10 67.4 64 56.2
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 4.6e-10 67.4 64 56.2
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.0e-09 66.2 44 65.9
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.3e-09 65.9 44 63.6
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 5.0e-09 63.9 43 67.4
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 1.5e-08 62.4 34 79.4
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 7.3e-08 60.1 43 65.1
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 9.5e-08 59.7 43 67.4
MCO03G596 Micromonas commoda HOM05D007316 ORTHO05D009393 9.5e-08 59.7 56 46.4
Gorai.013G118500 Gossypium raimondii HOM05D007316 ORTHO05D009393 1.2e-07 59.3 64 51.6
HPP92_022152 Vanilla planifolia HOM05D007316 ORTHO05D009393 1.6e-07 58.9 57 47.4
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 3.6e-07 57.8 43 60.5
Mapoly0010s0075 Marchantia polymorpha HOM05D007316 ORTHO05D009393 3.6e-07 57.8 66 42.4
CAN.G530.4 Capsicum annuum HOM05D007316 ORTHO05D009393 1.8e-06 55.5 38 63.2
Gohir.A13G102600 Gossypium hirsutum HOM05D007316 ORTHO05D009393 3.1e-06 54.7 64 48.4
Solyc08g006570.4 Solanum lycopersicum HOM05D007316 ORTHO05D009393 4.0e-06 54.3 34 70.6


User provided reference genes

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