Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G121400 Prunus persica HOM05D006335 ORTHO05D007617 9.5e-110 400.2 205 100.0
Prupe.3G117900 Prunus persica HOM05D006335 ORTHO05D007617 3.6e-56 222.2 206 60.7
MD09G1238400 Malus domestica HOM05D006335 ORTHO05D007617 8.2e-45 184.5 202 56.4
RcHm_v2.0_Chr2g0129291 Rosa chinensis HOM05D006335 ORTHO05D007617 4.0e-31 139.0 186 46.2
RcHm_v2.0_Chr2g0129361 Rosa chinensis HOM05D006335 ORTHO05D007617 7.0e-28 128.3 173 45.7
FAN09G0462 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.7e-27 126.3 106 58.5
FAN14G0983 Fragaria x ananassa HOM05D006335 ORTHO05D007617 4.5e-27 125.6 110 54.5
MD08G1181200 Malus domestica HOM05D006335 ORTHO05D007617 5.9e-27 125.2 112 62.5
FvH4_6g27220 Fragaria vesca HOM05D006335 ORTHO05D007617 2.2e-26 123.2 106 55.7
FvH4_6g27231 Fragaria vesca HOM05D006335 ORTHO05D007617 2.2e-26 123.2 148 51.4
FAN05G4039 Fragaria x ananassa HOM05D006335 ORTHO05D007617 2.9e-26 122.9 126 51.6
RcHm_v2.0_Chr2g0129301 Rosa chinensis HOM05D006335 ORTHO05D007617 1.8e-23 113.6 121 53.7
QL08p041551 Quercus lobata HOM05D006335 ORTHO05D007617 4.4e-22 109.0 203 38.4
Lalb_Chr01g0005971 Lupinus albus HOM05D006335 ORTHO05D007617 2.8e-21 106.3 110 48.2
CiPaw.04G132900 Carya illinoinensis HOM05D006335 ORTHO05D007617 8.3e-21 104.8 178 39.9
Phvul.011G133000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 2.4e-20 103.2 183 38.3
Cc05_g08270 Coffea canephora HOM05D006335 ORTHO05D007617 2.7e-19 99.8 185 36.8
Glyma.15G020200 Glycine max HOM05D006335 ORTHO05D007617 3.5e-19 99.4 121 43.8
Lj3g0002577 Lotus japonicus HOM05D006335 ORTHO05D007617 3.5e-19 99.4 181 37.0
Phvul.011G133700 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 3.5e-19 99.4 125 42.4
Glyma.06G277900 Glycine max HOM05D006335 ORTHO05D007617 5.9e-19 98.6 195 33.8
TPR.G28309 Trifolium pratense HOM05D006335 ORTHO05D007617 5.9e-19 98.6 146 37.7
VMungo1127G1825 Vigna mungo HOM05D006335 ORTHO05D007617 5.9e-19 98.6 130 40.8
TWI59G1087 Tripterygium wilfordii HOM05D006335 ORTHO05D007617 1.3e-18 97.4 169 37.3
arahy.Tifrunner.gnm1.ann1.IJ2KIS Arachis hypogaea HOM05D006335 ORTHO05D007617 2.3e-18 96.7 198 37.4
Ca_18884_v3 Cicer arietinum L. HOM05D006335 ORTHO05D007617 2.3e-18 96.7 138 38.4
Glyma.06G279000 Glycine max HOM05D006335 ORTHO05D007617 2.3e-18 96.7 124 41.9
Medtr4g079460 Medicago truncatula HOM05D006335 ORTHO05D007617 2.3e-18 96.7 146 39.0
Medtr4g079810 Medicago truncatula HOM05D006335 ORTHO05D007617 2.9e-18 96.3 126 42.1
Phvul.011G131000 Phaseolus vulgaris HOM05D006335 ORTHO05D007617 6.5e-18 95.1 135 40.7
arahy.Tifrunner.gnm1.ann1.Y7YMH3 Arachis hypogaea HOM05D006335 ORTHO05D007617 8.6e-18 94.7 191 37.7
COL.COLO4_33572 Corchorus olitorius HOM05D006335 ORTHO05D007617 3.2e-17 92.8 104 47.1
Actinidia04365 Actinidia chinensis HOM05D006335 ORTHO05D007617 4.2e-17 92.4 168 36.9
CANSAT64G2990 Cannabis sativa HOM05D006335 ORTHO05D007617 4.2e-17 92.4 175 36.0
Sed0026533 Sechium edule HOM05D006335 ORTHO05D007617 4.2e-17 92.4 160 40.6
Thecc.01G149900 Theobroma cacao HOM05D006335 ORTHO05D007617 4.2e-17 92.4 113 41.6
FAN05G3171 Fragaria x ananassa HOM05D006335 ORTHO05D007617 5.5e-17 92.0 149 45.6
arahy.Tifrunner.gnm1.ann1.E7WT9K Arachis hypogaea HOM05D006335 ORTHO05D007617 7.2e-17 91.7 175 38.3
Psat7g165440 Pisum sativum HOM05D006335 ORTHO05D007617 7.2e-17 91.7 153 33.3
TAR626G0568 Trochodendron aralioides HOM05D006335 ORTHO05D007617 7.2e-17 91.7 110 49.1
Hma1.2p1_0178F.1_g078870 Hydrangea macrophylla HOM05D006335 ORTHO05D007617 1.2e-16 90.9 101 48.5
VMungo1127G1181 Vigna mungo HOM05D006335 ORTHO05D007617 1.2e-16 90.9 143 37.8
Gorai.006G001500 Gossypium raimondii HOM05D006335 ORTHO05D007617 1.6e-16 90.5 98 46.9
Gohir.D09G001300 Gossypium hirsutum HOM05D006335 ORTHO05D007617 3.6e-16 89.4 98 45.9
Duzib147G1311 Durio zibethinus HOM05D006335 ORTHO05D007617 4.7e-16 89.0 118 39.8
Eucgr.K01124 Eucalyptus grandis HOM05D006335 ORTHO05D007617 8.0e-16 88.2 104 47.1
Cpa.g.sc209.36 Carica papaya HOM05D006335 ORTHO05D007617 1.4e-15 87.4 110 40.9
Psat7g165600 Pisum sativum HOM05D006335 ORTHO05D007617 1.8e-15 87.0 153 32.0
Aqoxy2G02728 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 6.8e-15 85.1 98 43.9
FAN14G0259 Fragaria x ananassa HOM05D006335 ORTHO05D007617 6.8e-15 85.1 73 58.9
Sabra05G0153900 Salix brachista HOM05D006335 ORTHO05D007617 8.8e-15 84.7 104 44.2
TAR624G0615 Trochodendron aralioides HOM05D006335 ORTHO05D007617 2.0e-14 83.6 100 45.0
Gohir.A09G001600 Gossypium hirsutum HOM05D006335 ORTHO05D007617 2.6e-14 83.2 99 44.4
Manes.01G133300 Manihot esculenta HOM05D006335 ORTHO05D007617 2.6e-14 83.2 188 35.1
CARHR005880 Cardamine hirsuta HOM05D006335 ORTHO05D007617 4.4e-14 82.4 111 39.6
Sp1g05110 Schrenkiella parvula HOM05D006335 ORTHO05D007617 4.4e-14 82.4 128 38.3
Lj1A685T55 Lonicera japonica HOM05D006335 ORTHO05D007617 7.5e-14 81.6 98 45.9
AL1G16330 Arabidopsis lyrata HOM05D006335 ORTHO05D007617 2.2e-13 80.1 109 38.5
PGR142G3040 Punica granatum HOM05D006335 ORTHO05D007617 6.3e-13 78.6 110 41.8
AT1G06320 Arabidopsis thaliana HOM05D006335 ORTHO05D007617 1.4e-12 77.4 107 36.4
A08p36030 Brassica napus HOM05D006335 ORTHO05D007617 1.4e-12 77.4 116 36.2
Carub.0001s0568 Capsella rubella HOM05D006335 ORTHO05D007617 1.4e-12 77.4 113 38.9
BraA08t35509Z Brassica rapa HOM05D006335 ORTHO05D007617 1.8e-12 77.0 116 36.2
TAR633G2592 Trochodendron aralioides HOM05D006335 ORTHO05D007617 1.8e-12 77.0 126 37.3
THA.LOC104816084 Tarenaya hassleriana HOM05D006335 ORTHO05D007617 3.1e-12 76.3 127 37.8
BcaC07g36801 Brassica carinata HOM05D006335 ORTHO05D007617 4.1e-12 75.9 116 36.2
BolC8t47040H Brassica oleracea HOM05D006335 ORTHO05D007617 4.1e-12 75.9 116 35.3
FAN21G0105 Fragaria x ananassa HOM05D006335 ORTHO05D007617 5.4e-12 75.5 149 42.3
Nn4g25571 Nelumbo nucifera HOM05D006335 ORTHO05D007617 5.4e-12 75.5 95 43.2
C08p02480 Brassica napus HOM05D006335 ORTHO05D007617 9.2e-12 74.7 116 35.3
Thhalv10009758m.g Eutrema salsugineum HOM05D006335 ORTHO05D007617 9.2e-12 74.7 102 37.3
Nitab4.5_0008326g0020 Nicotiana tabacum HOM05D006335 ORTHO05D007617 9.2e-12 74.7 108 40.7
Potri.005G202500 Populus trichocarpa HOM05D006335 ORTHO05D007617 9.2e-12 74.7 100 44.0
Solyc12g010850.1 Solanum lycopersicum HOM05D006335 ORTHO05D007617 9.2e-12 74.7 135 34.1
Sopen12g006210 Solanum pennellii HOM05D006335 ORTHO05D007617 1.2e-11 74.3 135 34.1
GSVIVG01034999001 Vitis vinifera HOM05D006335 ORTHO05D007617 1.2e-11 74.3 100 39.0
Aqoxy1G02076 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 3.5e-11 72.8 152 30.9
C08p51300 Brassica napus HOM05D006335 ORTHO05D007617 3.5e-11 72.8 104 37.5
BolC8t52656H Brassica oleracea HOM05D006335 ORTHO05D007617 3.5e-11 72.8 104 37.5
Haze_13357 Corylus avellana HOM05D006335 ORTHO05D007617 3.5e-11 72.8 69 53.6
BcaC07g42074 Brassica carinata HOM05D006335 ORTHO05D007617 1.7e-10 70.5 106 35.8
Hund07816 Selenicereus undatus HOM05D006335 ORTHO05D007617 2.3e-10 70.1 180 28.9
Aa31LG1G7320 Aethionema arabicum HOM05D006335 ORTHO05D007617 2.9e-10 69.7 139 33.1
Dinv15181 Davidia involucrata HOM05D006335 ORTHO05D007617 3.8e-10 69.3 114 37.7
SHI18965 Sapria himalayana HOM05D006335 ORTHO05D007617 3.8e-10 69.3 97 39.2
arahy.Tifrunner.gnm1.ann1.DF2I7I Arachis hypogaea HOM05D006335 ORTHO05D007617 5.0e-10 68.9 101 40.6
PSO170G4547 Papaver somniferum HOM05D006335 ORTHO05D007617 5.0e-10 68.9 97 42.3
Nitab4.5_0000537g0060 Nicotiana tabacum HOM05D006335 ORTHO05D007617 6.6e-10 68.6 104 39.4
A09p67040 Brassica napus HOM05D006335 ORTHO05D007617 8.6e-10 68.2 104 36.5
BraA09t42038Z Brassica rapa HOM05D006335 ORTHO05D007617 8.6e-10 68.2 104 36.5
BcaB03g13422 Brassica carinata HOM05D006335 ORTHO05D007617 1.5e-09 67.4 107 36.4
FAN16G3721 Fragaria x ananassa HOM05D022579 ORTHO05D007617 3.3e-09 66.2 53 56.6
Thecc.04G299900 Theobroma cacao HOM05D006335 ORTHO05D007617 4.3e-09 65.9 116 36.2
Glyma.12G127400 Glycine max HOM05D006335 ORTHO05D007617 1.6e-08 63.9 79 41.8
vmacro14418 Vaccinium macrocarpon HOM05D000550 ORTHO05D000400 2.1e-08 63.5 61 52.5
Sc05g0006750 Simmondsia chinensis HOM05D006335 ORTHO05D007617 3.6e-08 62.8 160 30.6
Ciclev10016971m.g Citrus clementina HOM05D006335 ORTHO05D007617 4.7e-08 62.4 69 46.4
Dinv15448 Davidia involucrata HOM05D006335 ORTHO05D007617 4.7e-08 62.4 115 37.4
Os03g0308600 Oryza sativa ssp. japonica HOM05D006335 ORTHO05D007617 6.1e-08 62.0 102 35.3
Aqoxy3G00772 Aquilegia oxysepala HOM05D006335 ORTHO05D007617 8.0e-08 61.6 98 34.7
Lsat_1_v5_gn_8_120600 Lactuca sativa HOM05D006335 ORTHO05D007617 1.0e-07 61.2 100 38.0
ECA246G1597 Erigeron canadensis HOM05D006335 ORTHO05D007617 2.3e-07 60.1 113 35.4
HanXRQChr16g0530371 Helianthus annuus HOM05D006335 ORTHO05D007617 2.3e-07 60.1 75 40.0
COL.COLO4_34622 Corchorus olitorius HOM05D006335 ORTHO05D007617 3.0e-07 59.7 93 35.5
EL10Ac3g05494 Beta vulgaris HOM05D006335 ORTHO05D007617 4.0e-07 59.3 125 32.0
ECA238G3583 Erigeron canadensis HOM05D006335 ORTHO05D007617 1.5e-06 57.4 75 40.0
PGSC0003DMG400007858 Solanum tuberosum HOM05D006335 ORTHO05D007617 2.6e-06 56.6 135 31.1
Zm00001eb014790 Zea mays HOM05D006335 ORTHO05D007617 2.6e-06 56.6 147 27.2


User provided reference genes

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