Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 0.0e+00 1637.5 870 100.0
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 0.0e+00 1437.2 870 86.6
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1373.6 870 82.9
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1332.8 870 79.5
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 0.0e+00 1331.6 870 79.4
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1331.2 870 80.1
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1330.1 870 79.5
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1294.3 869 75.8
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1260.4 869 73.8
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 0.0e+00 1250.7 870 74.4
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 0.0e+00 1244.6 870 73.3
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1230.7 870 73.3
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1203.0 870 72.1
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1201.0 870 73.1
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1194.1 870 70.9
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1193.7 870 70.8
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 0.0e+00 1189.1 836 72.5
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 0.0e+00 1189.1 870 71.3
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 0.0e+00 1181.4 870 72.8
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1180.2 870 69.8
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 0.0e+00 1171.4 870 70.9
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 0.0e+00 1167.9 867 69.6
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1167.9 870 71.1
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1167.5 871 70.3
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 0.0e+00 1166.8 870 70.8
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1166.4 872 69.5
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 0.0e+00 1159.8 870 70.5
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 0.0e+00 1146.0 870 68.6
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 0.0e+00 1139.4 870 68.6
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1138.3 871 69.5
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 0.0e+00 1137.9 870 70.2
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1136.3 870 68.5
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 0.0e+00 1135.6 870 68.5
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 0.0e+00 1135.6 870 70.5
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 0.0e+00 1132.9 871 69.1
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 0.0e+00 1124.0 868 68.2
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 0.0e+00 1120.5 876 67.0
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 0.0e+00 1119.8 871 68.9
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 0.0e+00 1113.2 874 67.2
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 0.0e+00 1112.4 870 68.2
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 0.0e+00 1106.3 872 67.2
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 0.0e+00 1105.5 868 66.7
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1102.4 887 66.3
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 0.0e+00 1100.1 868 66.6
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 0.0e+00 1095.1 872 66.2
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 0.0e+00 1094.7 870 65.3
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1091.6 827 67.2
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 0.0e+00 1085.9 756 76.6
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 0.0e+00 1085.5 868 65.2
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 1.5e-310 1069.3 869 64.7
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 8.5e-309 1063.5 869 65.1
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 8.5e-309 1063.5 865 64.4
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 1.4e-308 1062.8 870 65.5
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 1.4e-308 1062.8 854 64.6
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 4.2e-308 1061.2 865 64.9
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 1.6e-307 1059.3 879 64.3
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 1.6e-307 1059.3 865 64.4
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 1.0e-306 1056.6 864 63.8
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 1.8e-306 1055.8 850 64.8
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 9.4e-300 1033.5 883 62.5
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 1.0e-298 1030.0 876 62.7
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 7.5e-297 1023.8 876 63.7
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 7.0e-295 1017.3 873 64.9
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 1.2e-294 1016.5 852 62.9
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 2.7e-294 1015.4 878 62.0
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 4.5e-294 1014.6 873 62.3
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 2.1e-291 1005.7 877 60.2
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 1.3e-288 996.5 873 60.7
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 1.4e-287 993.0 874 60.5
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 3.1e-287 991.9 874 60.2
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 3.1e-287 991.9 874 60.5
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 2.0e-286 989.2 920 57.8
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 4.2e-284 981.5 873 59.8
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 4.2e-284 981.5 873 60.1
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 1.2e-283 979.9 827 64.2
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 2.1e-283 979.2 883 59.8
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 2.1e-283 979.2 868 59.9
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 3.6e-283 978.4 875 60.1
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 1.8e-282 976.1 875 59.2
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 4.0e-282 974.9 808 64.2
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 7.5e-281 970.7 811 63.4
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 8.3e-280 967.2 858 61.4
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 1.6e-278 963.0 859 60.3
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 7.3e-276 954.1 757 68.2
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 6.4e-272 941.0 854 60.1
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 1.9e-263 912.9 833 58.7
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 4.0e-258 895.2 870 56.3
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 2.5e-252 875.9 812 58.4
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 2.5e-252 875.9 871 55.9
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 2.8e-251 872.5 857 55.9
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 1.2e-249 867.1 869 54.9
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 3.8e-248 862.1 653 70.1
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 9.2e-247 857.4 871 54.5
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 8.1e-243 844.3 871 52.4
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 3.6e-235 818.9 691 65.4
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 1.8e-229 800.0 813 55.1
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 2.5e-228 796.2 877 52.6
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 5.7e-204 715.3 756 52.2
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 7.2e-175 618.6 526 64.3
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 2.7e-169 600.1 732 49.0
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 3.3e-143 513.5 442 60.6
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 2.9e-139 500.4 845 37.5
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 1.8e-133 481.1 877 36.7
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 3.6e-126 456.8 858 36.2
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 5.6e-111 406.4 327 64.5
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 1.1e-101 375.6 1011 30.1
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 1.7e-51 208.8 205 54.1
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 2.9e-30 138.3 100 70.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.7e-27 129.0 121 59.5
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 1.7e-19 102.4 591 22.5
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 5.1e-19 100.9 63 76.2
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 8.6e-19 100.1 65 69.2
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 5.6e-18 97.4 585 24.1
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 6.2e-17 94.0 66 66.7
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 1.5e-15 89.4 53 75.5
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 8.4e-14 83.6 57 68.4
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 1.9e-13 82.4 65 60.0
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 4.2e-13 81.3 57 63.2
PRCOL_00003865 Prasinoderma coloniale HOM05D006510 ORTHO05D008171 4.8e-09 67.8 633 21.3
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 2.4e-08 65.5 101 45.5
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 5.8e-07 60.8 114 37.7


User provided reference genes

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