Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G111800 Prunus persica HOM05D002103 ORTHO05D004020 7.0e-113 410.6 203 100.0
Prupe.1G438400 Prunus persica HOM05D002103 ORTHO05D004020 4.6e-72 275.0 271 59.4
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 5.6e-70 268.1 280 53.9
MD08G1103400 Malus domestica HOM05D002103 ORTHO05D004020 4.4e-67 258.5 279 52.7
FvH4_2g34620 Fragaria vesca HOM05D002103 ORTHO05D004020 1.7e-55 219.9 282 47.9
FAN15G2894 Fragaria x ananassa HOM05D002103 ORTHO05D004020 3.0e-55 219.2 282 47.9
FAN20G2977 Fragaria x ananassa HOM05D002103 ORTHO05D004020 1.3e-53 213.8 292 46.6
RcHm_v2.0_Chr6g0307681 Rosa chinensis HOM05D002103 ORTHO05D004020 4.8e-53 211.8 281 46.6
FAN27G3124 Fragaria x ananassa HOM05D002103 ORTHO05D004020 3.1e-52 209.1 292 45.5
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 6.9e-52 208.0 272 45.2
CiPaw.15G061600 Carya illinoinensis HOM05D002103 ORTHO05D004020 1.7e-47 193.4 271 44.3
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 1.1e-46 190.7 273 44.7
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 2.1e-45 186.4 271 42.1
COL.COLO4_26478 Corchorus olitorius HOM05D002103 ORTHO05D004020 2.8e-45 186.0 273 42.5
Thecc.08G010900 Theobroma cacao HOM05D002103 ORTHO05D004020 1.4e-44 183.7 271 42.1
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 3.1e-44 182.6 271 41.7
MELO3C010883.2 Cucumis melo HOM05D002103 ORTHO05D004020 1.2e-43 180.6 271 40.6
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 1.2e-43 180.6 274 39.4
Sabra02G0100000 Salix brachista HOM05D002103 ORTHO05D004020 2.0e-43 179.9 290 39.7
CsaV3_2G028030 Cucumis sativus L. HOM05D002103 ORTHO05D004020 7.6e-43 177.9 271 39.9
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 7.6e-43 177.9 273 40.3
Manes.18G032500 Manihot esculenta HOM05D002103 ORTHO05D004020 7.6e-43 177.9 272 40.8
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 9.9e-43 177.6 272 43.0
TWI56G0490 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 9.9e-43 177.6 271 39.1
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 2.9e-42 176.0 273 39.6
Manes.05G171920 Manihot esculenta HOM05D002103 ORTHO05D004020 2.9e-42 176.0 271 40.6
Manes.05G171940 Manihot esculenta HOM05D002103 ORTHO05D004020 2.9e-42 176.0 271 40.6
Manes.05G172000 Manihot esculenta HOM05D002103 ORTHO05D004020 2.9e-42 176.0 271 40.6
Sed0011304 Sechium edule HOM05D002103 ORTHO05D004020 2.9e-42 176.0 279 39.1
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 3.8e-42 175.6 272 40.4
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 4.9e-42 175.3 272 40.1
Potri.014G031900 Populus trichocarpa HOM05D002103 ORTHO05D004020 6.4e-42 174.9 272 40.1
Gorai.010G018100 Gossypium raimondii HOM05D002103 ORTHO05D004020 8.4e-42 174.5 295 37.6
PGR083G1022 Punica granatum HOM05D002103 ORTHO05D004020 8.4e-42 174.5 271 41.3
Dinv39328 Davidia involucrata HOM05D002103 ORTHO05D004020 1.1e-41 174.1 273 41.4
Sed0003893 Sechium edule HOM05D002103 ORTHO05D004020 1.4e-41 173.7 270 40.4
Dinv35973 Davidia involucrata HOM05D002103 ORTHO05D004020 1.9e-41 173.3 272 42.6
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 2.4e-41 172.9 282 39.4
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 3.5e-40 169.1 272 39.7
Duzib041G0561 Durio zibethinus HOM05D002103 ORTHO05D004020 3.5e-40 169.1 271 39.9
Nn1g05835 Nelumbo nucifera HOM05D002103 ORTHO05D004020 7.9e-40 167.9 254 42.1
ClCG08G015730 Citrullus lanatus HOM05D002103 ORTHO05D004020 1.0e-39 167.5 302 36.1
TWI36G1154 Tripterygium wilfordii HOM05D002103 ORTHO05D004020 1.8e-39 166.8 270 37.8
Actinidia23265 Actinidia chinensis HOM05D002103 ORTHO05D004020 3.0e-39 166.0 271 41.7
HanXRQChr02g0037661 Helianthus annuus HOM05D002103 ORTHO05D004020 3.0e-39 166.0 271 39.5
Cc10_g04320 Coffea canephora HOM05D002103 ORTHO05D004020 1.1e-38 164.1 287 38.3
SGA_v2.0_scaffold14G07034 Striga asiatica HOM05D002103 ORTHO05D004020 4.3e-38 162.2 272 39.7
MSTRG.24326 Avicennia marina HOM05D002103 ORTHO05D004020 2.1e-37 159.8 272 39.7
Migut.N02702 Erythranthe guttata HOM05D002103 ORTHO05D004020 2.1e-37 159.8 280 40.0
Gohir.A01G118700 Gossypium hirsutum HOM05D002103 ORTHO05D004020 2.1e-37 159.8 275 38.2
Gorai.002G131200 Gossypium raimondii HOM05D002103 ORTHO05D004020 4.8e-37 158.7 275 38.2
RcHm_v2.0_Chr6g0258511 Rosa chinensis HOM05D002103 ORTHO05D004020 4.8e-37 158.7 185 49.2
Ciclev10001804m.g Citrus clementina HOM05D002103 ORTHO05D004020 6.2e-37 158.3 274 38.0
Gohir.D01G106900 Gossypium hirsutum HOM05D002103 ORTHO05D004020 8.1e-37 157.9 275 37.8
Oeu009550.1 Olea europaea HOM05D002103 ORTHO05D004020 1.1e-36 157.5 272 40.1
Peaxi162Scf00929g00314 Petunia axillaris HOM05D002103 ORTHO05D004020 1.1e-36 157.5 272 39.0
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 2.4e-36 156.4 272 37.1
VMungo1309G0516 Vigna mungo HOM05D002103 ORTHO05D004020 3.1e-36 156.0 273 39.6
Lsat_1_v5_gn_1_20261 Lactuca sativa HOM05D002103 ORTHO05D004020 4.0e-36 155.6 277 37.9
THA.LOC104803681 Tarenaya hassleriana HOM05D002103 ORTHO05D004020 5.3e-36 155.2 270 38.1
Eucgr.F00240 Eucalyptus grandis HOM05D002103 ORTHO05D004020 6.9e-36 154.8 273 37.4
Thhalv10025691m.g Eutrema salsugineum HOM05D002103 ORTHO05D004020 1.5e-35 153.7 271 38.0
Lj5g0018432 Lotus japonicus HOM05D002103 ORTHO05D004020 2.0e-35 153.3 278 37.8
PGSC0003DMG400007986 Solanum tuberosum HOM05D002103 ORTHO05D004020 2.0e-35 153.3 272 36.8
Peaxi162Scf00528g00417 Petunia axillaris HOM05D002103 ORTHO05D004020 2.6e-35 152.9 272 36.8
BcaC09g52142 Brassica carinata HOM05D002103 ORTHO05D004020 5.8e-35 151.8 269 37.9
CAN.G371.35 Capsicum annuum HOM05D002103 ORTHO05D004020 5.8e-35 151.8 272 36.8
BcaC09g52145 Brassica carinata HOM05D002103 ORTHO05D004020 2.2e-34 149.8 271 38.7
BolC1t00510H Brassica oleracea HOM05D002103 ORTHO05D004020 2.2e-34 149.8 271 38.7
Glyma.06G038500 Glycine max HOM05D002103 ORTHO05D004020 2.2e-34 149.8 273 38.1
Glyma.17G243300 Glycine max HOM05D002103 ORTHO05D004020 2.2e-34 149.8 286 36.4
Nitab4.5_0001101g0080 Nicotiana tabacum HOM05D002103 ORTHO05D004020 2.2e-34 149.8 280 35.4
SalBow7G3772 Salvia bowleyana HOM05D002103 ORTHO05D004020 2.9e-34 149.4 300 35.0
Sp7g31080 Schrenkiella parvula HOM05D002103 ORTHO05D004020 2.9e-34 149.4 271 37.6
Phvul.009G063800 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 3.8e-34 149.1 273 37.7
Potri.002G127700 Populus trichocarpa HOM05D002103 ORTHO05D004020 4.9e-34 148.7 237 38.0
BraA01t00472Z Brassica rapa HOM05D002198 ORTHO05D004020 6.5e-34 148.3 271 38.4
Nitab4.5_0000686g0060 Nicotiana tabacum HOM05D002103 ORTHO05D004020 8.4e-34 147.9 280 34.3
vmacro21537 Vaccinium macrocarpon HOM05D002103 ORTHO05D004020 1.1e-33 147.5 319 33.9
arahy.Tifrunner.gnm1.ann1.Z2DAXP Arachis hypogaea HOM05D002103 ORTHO05D004020 1.4e-33 147.1 272 37.1
CARHR241420 Cardamine hirsuta HOM05D002103 ORTHO05D004020 1.4e-33 147.1 270 37.0
Glyma.04G037600 Glycine max HOM05D002103 ORTHO05D004020 1.4e-33 147.1 273 37.4
Glyma.14G082000 Glycine max HOM05D002103 ORTHO05D004020 1.4e-33 147.1 278 37.1
BcaB03g12802 Brassica carinata HOM05D002103 ORTHO05D004020 1.9e-33 146.7 271 37.6
VMungo0647G0899 Vigna mungo HOM05D002103 ORTHO05D004020 1.9e-33 146.7 278 36.0
arahy.Tifrunner.gnm1.ann1.75Q1P4 Arachis hypogaea HOM05D002103 ORTHO05D004020 2.5e-33 146.4 272 37.1
A08p17650 Brassica napus HOM05D002103 ORTHO05D004020 2.5e-33 146.4 271 38.0
RcHm_v2.0_Chr6g0307521 Rosa chinensis HOM05D002103 ORTHO05D004020 4.2e-33 145.6 291 36.8
BolC3t20965H Brassica oleracea HOM05D002103 ORTHO05D004020 7.1e-33 144.8 271 37.6
Lalb_Chr23g0266991 Lupinus albus HOM05D002103 ORTHO05D004020 7.1e-33 144.8 273 36.6
Ah.05g168830 Amaranthus hybridus HOM05D002103 ORTHO05D004020 9.3e-33 144.4 273 34.8
CAN.G52.6 Capsicum annuum HOM05D002103 ORTHO05D004020 9.3e-33 144.4 273 35.5
Medtr1g019780 Medicago truncatula HOM05D002103 ORTHO05D004020 1.2e-32 144.1 278 36.3
BraA08t33716Z Brassica rapa HOM05D002103 ORTHO05D004020 1.6e-32 143.7 271 37.6
DCAR_019463 Daucus carota HOM05D002103 ORTHO05D004020 1.6e-32 143.7 272 36.8
Aqoxy6G01360 Aquilegia oxysepala HOM05D002103 ORTHO05D004020 2.1e-32 143.3 278 34.9
Lalb_Chr14g0368771 Lupinus albus HOM05D002103 ORTHO05D004020 2.1e-32 143.3 282 36.2
Phvul.001G021000 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 2.1e-32 143.3 278 36.3
BcaC01g00993 Brassica carinata HOM05D002103 ORTHO05D004020 2.7e-32 142.9 271 37.3
C03p86710 Brassica napus HOM05D002103 ORTHO05D004020 2.7e-32 142.9 271 37.3
BolC3t20967H Brassica oleracea HOM05D002103 ORTHO05D004020 2.7e-32 142.9 271 37.3
CSS0022665 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 4.6e-32 142.1 235 40.0
Lalb_Chr22g0355191 Lupinus albus HOM05D002103 ORTHO05D004020 4.6e-32 142.1 282 36.2
Psat6g012640 Pisum sativum HOM05D002103 ORTHO05D004020 6.0e-32 141.7 277 35.7
AL7G18190 Arabidopsis lyrata HOM05D002103 ORTHO05D004020 1.3e-31 140.6 271 36.2
Carub.0007s0711 Capsella rubella HOM05D002103 ORTHO05D004020 1.3e-31 140.6 271 36.2
MBI02_g17341_MAGBIO Magnolia biondii HOM05D002103 ORTHO05D004020 1.3e-31 140.6 282 34.0
ATR0100G056 Amborella trichopoda HOM05D002103 ORTHO05D004020 6.7e-31 138.3 278 36.0
A01p04900 Brassica napus HOM05D002198 ORTHO05D004020 6.7e-31 138.3 295 35.6
Duzib116G0153 Durio zibethinus HOM05D002103 ORTHO05D004020 1.1e-30 137.5 236 37.7
Sopen07g013400 Solanum pennellii HOM05D002103 ORTHO05D004020 1.9e-30 136.7 272 36.4
AT4G33380 Arabidopsis thaliana HOM05D002103 ORTHO05D004020 1.6e-29 133.7 271 35.8
Medtr3g101480 Medicago truncatula HOM05D002103 ORTHO05D004020 4.8e-29 132.1 275 36.7
AUR62039305 Chenopodium quinoa HOM05D002103 ORTHO05D004020 8.2e-29 131.3 287 31.7
TPR.G35873 Trifolium pratense HOM05D002103 ORTHO05D004020 8.2e-29 131.3 274 36.1
Lsat_1_v5_gn_6_113661 Lactuca sativa HOM05D002103 ORTHO05D004020 1.1e-28 131.0 249 33.3
Rhsim06G0048300 Rhododendron simsii HOM05D002103 ORTHO05D004020 9.0e-28 127.9 227 37.9
TPR.G13687 Trifolium pratense HOM05D002103 ORTHO05D004020 5.9e-27 125.2 323 31.3
PSO675G6562 Papaver somniferum HOM05D002103 ORTHO05D004020 1.7e-26 123.6 239 34.7
Solyc04g079160.4 Solanum lycopersicum HOM05D002103 ORTHO05D004020 2.9e-26 122.9 247 33.2
PSO541G4087 Papaver somniferum HOM05D002103 ORTHO05D004020 3.8e-26 122.5 234 34.6
Hund17586 Selenicereus undatus HOM05D002103 ORTHO05D004020 8.4e-26 121.3 243 32.9
CSS0001953 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 1.1e-25 120.9 256 38.3
Sc02g0007040 Simmondsia chinensis HOM05D002103 ORTHO05D004020 1.1e-25 120.9 255 32.5
arahy.Tifrunner.gnm1.ann1.3IZ1KA Arachis hypogaea HOM05D002103 ORTHO05D004020 4.2e-25 119.0 259 32.8
arahy.Tifrunner.gnm1.ann1.II6H71 Arachis hypogaea HOM05D002103 ORTHO05D004020 4.2e-25 119.0 259 32.8
arahy.Tifrunner.gnm1.ann1.YT15EQ Arachis hypogaea HOM05D002103 ORTHO05D004020 4.2e-25 119.0 259 32.8
SalBow3G3013 Salvia bowleyana HOM05D002103 ORTHO05D004020 4.2e-25 119.0 227 36.6
Psat0s3123g0080 Pisum sativum HOM05D002103 ORTHO05D004020 5.5e-25 118.6 275 33.8
ECA246G3192 Erigeron canadensis HOM05D002103 ORTHO05D004020 2.7e-24 116.3 238 34.5
QL02p005375 Quercus lobata HOM05D002103 ORTHO05D004020 7.9e-24 114.8 110 59.1
Lj4A775T63 Lonicera japonica HOM05D002103 ORTHO05D004020 4.3e-22 109.0 255 33.7
Sopen04g032770 Solanum pennellii HOM05D002103 ORTHO05D004020 9.7e-22 107.8 227 33.9
Cpa.g.sc49.1 Carica papaya HOM05D002103 ORTHO05D004020 2.2e-21 106.7 112 53.6
Os06g0214100 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 4.8e-21 105.5 270 30.7
ECA247G1496 Erigeron canadensis HOM05D002103 ORTHO05D004020 6.3e-21 105.1 227 33.0
Os02g0761600 Oryza sativa ssp. japonica HOM05D002103 ORTHO05D004020 9.0e-20 101.3 269 33.5
Zm00001eb373130 Zea mays HOM05D002103 ORTHO05D004020 4.5e-19 99.0 263 30.8
EL10Ac1g01784 Beta vulgaris HOM05D002103 ORTHO05D004020 3.8e-18 95.9 143 44.8
Zm00001eb255700 Zea mays HOM05D002103 ORTHO05D004020 3.8e-18 95.9 263 32.3
HPP92_027223 Vanilla planifolia HOM05D002103 ORTHO05D004020 4.2e-17 92.4 278 26.6
PGSC0003DMG400041182 Solanum tuberosum HOM05D002103 ORTHO05D004020 1.6e-16 90.5 206 32.0
QL02p005379 Quercus lobata HOM05D002103 ORTHO05D004020 1.0e-15 87.8 58 58.6
Haze_17544 Corylus avellana HOM05D002103 ORTHO05D004020 1.4e-15 87.4 59 55.9
Haze_17553 Corylus avellana HOM05D002103 ORTHO05D004020 1.4e-15 87.4 59 55.9
Nitab4.5_0004897g0010 Nicotiana tabacum HOM05D002103 ORTHO05D004020 3.0e-15 86.3 48 64.6
arahy.Tifrunner.gnm1.ann1.S2AHNK Arachis hypogaea HOM05D002103 ORTHO05D004020 6.7e-15 85.1 60 56.7
arahy.Tifrunner.gnm1.ann1.VN362G Arachis hypogaea HOM05D002103 ORTHO05D004020 6.7e-15 85.1 60 56.7
Nitab4.5_0001024g0020 Nicotiana tabacum HOM05D002103 ORTHO05D004020 8.8e-15 84.7 48 64.6
Atru.chr11.91 Acer truncatum HOM05D002103 ORTHO05D004020 1.1e-14 84.3 178 30.3
Nitab4.5_0001024g0010 Nicotiana tabacum HOM05D002103 ORTHO05D004020 1.5e-14 84.0 114 47.4
CDE02G4038 Ceratophyllum demersum HOM05D002103 ORTHO05D004020 2.0e-14 83.6 59 57.6
AUR62022429 Chenopodium quinoa HOM05D002103 ORTHO05D004020 2.0e-14 83.6 111 48.6
Psat3g152440 Pisum sativum HOM05D002103 ORTHO05D004020 2.5e-14 83.2 58 55.2
Psat7g222680 Pisum sativum HOM05D002103 ORTHO05D004020 2.5e-14 83.2 58 55.2
Actinidia22618 Actinidia chinensis HOM05D002103 ORTHO05D004020 3.3e-14 82.8 58 53.4
AUR62022428 Chenopodium quinoa HOM05D002103 ORTHO05D004020 5.7e-14 82.0 59 50.8
Lj4A54G47 Lonicera japonica HOM05D002103 ORTHO05D004020 1.3e-13 80.9 196 29.6
SEGI_41572 Sequoiadendron giganteum HOM05D002103 ORTHO05D004020 1.3e-13 80.9 58 53.4
Migut.C00595 Erythranthe guttata HOM05D002103 ORTHO05D004020 2.2e-13 80.1 48 62.5
CDE02G3402 Ceratophyllum demersum HOM05D002103 ORTHO05D004020 3.7e-13 79.3 116 42.2
Oeu006152.1 Olea europaea HOM05D002103 ORTHO05D004020 3.7e-13 79.3 46 63.0
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 2.4e-12 76.6 47 59.6
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 5.3e-12 75.5 47 57.4
Zm00001eb279800 Zea mays HOM05D002103 ORTHO05D004020 9.1e-12 74.7 58 48.3
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 1.5e-11 73.9 47 59.6
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 1.5e-11 73.9 47 55.3
Pp3c27_1800 Physcomitrium patens HOM05D002103 ORTHO05D004020 3.4e-11 72.8 214 26.2
Pp3c19_17840 Physcomitrium patens HOM05D002103 ORTHO05D004020 4.5e-11 72.4 58 48.3
SEGI_28946 Sequoiadendron giganteum HOM05D002103 ORTHO05D004020 1.0e-10 71.2 113 39.8
Aa31LG3G7420 Aethionema arabicum HOM05D002103 ORTHO05D004020 2.5e-09 66.6 150 36.7
Pp3c5_13510 Physcomitrium patens HOM05D002103 ORTHO05D004020 3.2e-09 66.2 47 48.9
AagrBONN_evm.TU.Sc2ySwM_362.2117 Anthoceros agrestis HOM05D002103 ORTHO05D004020 4.7e-08 62.4 43 55.8
Gorai.010G077200 Gossypium raimondii HOM05D002103 ORTHO05D004020 7.9e-08 61.6 66 51.5
Gohir.D12G161700 Gossypium hirsutum HOM05D002103 ORTHO05D004020 1.1e-06 57.8 66 50.0


User provided reference genes

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