Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1567.0 785 100.0
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1399.0 782 87.9
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1390.9 780 87.3
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1370.5 817 83.2
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1368.2 821 82.9
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1320.8 780 83.2
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1318.1 773 82.5
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1308.5 773 82.4
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1307.7 772 83.3
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1307.4 771 83.3
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1306.6 790 81.0
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1303.5 771 83.0
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1302.3 771 82.9
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1300.8 780 81.0
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1300.4 774 81.3
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1292.7 773 81.6
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1286.2 771 80.8
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1273.5 776 80.8
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1273.1 773 80.1
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1272.7 780 79.9
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1266.1 756 83.1
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1265.8 771 80.0
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1264.2 774 79.7
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1263.4 773 79.6
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1261.5 773 79.6
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1257.7 782 80.4
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1257.3 819 75.0
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1255.4 781 79.6
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1254.2 772 79.4
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1253.8 774 79.5
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1253.0 890 72.9
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1251.5 773 78.3
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1251.5 774 78.7
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1249.2 782 79.9
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1243.0 771 78.9
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1241.1 772 77.8
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1240.3 777 77.6
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1238.4 764 80.6
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1235.7 781 77.5
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1233.8 771 78.2
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1231.9 758 80.6
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1226.1 757 78.9
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1226.1 773 77.2
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1225.7 775 76.4
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1222.6 773 76.1
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1222.6 774 78.2
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1221.5 777 76.8
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1219.5 772 76.8
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1218.8 773 76.3
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1216.4 769 76.6
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1209.5 778 76.2
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1201.8 771 74.4
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1199.9 782 76.6
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1199.1 773 75.5
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1198.0 771 74.4
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1196.0 773 74.6
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1192.6 773 74.5
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1192.2 772 76.7
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1191.4 773 74.1
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1190.6 773 74.3
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1190.3 783 75.5
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1189.1 771 74.1
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1188.3 771 74.7
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1188.3 771 74.1
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1188.3 774 74.9
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 0.0e+00 1187.6 778 78.9
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1184.9 771 73.8
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1184.1 771 74.7
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1183.3 782 74.4
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1175.6 771 73.9
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1174.1 772 74.7
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1172.1 782 74.3
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1169.5 771 73.0
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1165.2 771 73.5
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1161.4 771 73.0
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1160.2 782 73.4
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1152.1 691 82.6
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 0.0e+00 1151.7 785 72.9
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1146.3 775 73.0
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1145.2 781 71.6
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1131.7 676 80.9
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1130.9 777 70.0
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1127.1 771 71.6
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1125.9 751 73.1
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1125.9 774 70.8
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1122.5 769 72.4
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 0.0e+00 1120.9 699 78.1
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1117.8 779 70.5
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1115.5 781 70.2
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1109.0 784 69.9
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 0.0e+00 1095.9 739 74.8
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1082.0 777 69.1
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 0.0e+00 1080.9 758 71.6
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 2.7e-311 1071.6 786 68.7
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 1.2e-309 1066.2 667 78.4
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 1.2e-306 1056.2 742 71.2
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 2.0e-296 1022.3 772 65.8
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 4.8e-295 1017.7 752 68.5
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 4.2e-291 1004.6 747 66.4
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 9.4e-283 976.9 777 63.4
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 4.7e-282 974.5 752 66.6
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 2.6e-280 968.8 770 61.9
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 3.1e-278 961.8 767 63.1
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 5.5e-275 951.0 634 76.0
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.8e-273 946.0 662 72.8
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 3.0e-260 902.1 571 78.8
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 6.8e-257 891.0 711 62.7
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.2e-253 880.2 564 75.4
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 5.0e-252 874.8 671 65.6
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 3.1e-249 865.5 646 66.6
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 8.6e-244 847.4 510 80.2
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 4.2e-230 802.0 771 56.3
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 9.0e-201 704.5 443 78.1
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 3.4e-200 702.6 445 76.6
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 7.0e-161 572.0 350 78.6
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 6.3e-154 548.9 373 74.0
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.6e-152 544.3 608 50.5
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 7.3e-126 455.7 273 81.7
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.5e-123 448.0 346 62.4
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 1.8e-103 381.3 249 73.1
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 8.4e-98 362.5 250 70.8
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 8.2e-85 319.3 361 49.9
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 3.4e-83 313.9 260 67.7
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.0e-82 312.4 266 63.5
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.7e-78 296.6 185 74.1
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 5.0e-74 283.5 260 61.2
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.3e-71 274.6 157 82.2
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.3e-66 258.8 139 85.6
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.3e-66 258.8 213 63.8
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 1.8e-63 248.4 229 55.5
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.7e-63 246.5 139 82.0
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.2e-50 204.9 106 90.6
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 4.2e-49 200.7 106 88.7
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 2.7e-48 198.0 156 64.7
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.6e-48 197.6 107 84.1
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 1.0e-47 196.1 118 82.2
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-47 194.5 207 51.7
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 2.2e-45 188.3 106 81.1
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 6.3e-45 186.8 149 62.4
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.9e-41 175.3 105 72.4
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 9.5e-41 172.9 119 70.6
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 3.0e-39 167.9 87 88.5
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 6.8e-39 166.8 85 89.4
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.3e-37 162.5 101 74.3
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 2.8e-37 161.4 94 84.0
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.9e-33 148.7 81 81.5
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 1.6e-32 145.6 95 69.5
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.6e-32 144.4 99 71.7
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.6e-32 144.4 99 71.7
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.0e-32 143.3 99 70.7
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.8e-31 142.1 85 77.6
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.6e-30 138.3 81 75.3
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 3.7e-29 134.4 104 67.3
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.2e-28 131.3 216 39.8
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 2.7e-27 128.3 72 81.9
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.3e-26 125.2 216 38.9
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.1e-23 116.3 74 71.6
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 2.4e-20 105.1 89 59.6
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 3.9e-18 97.8 163 39.3
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 1.5e-17 95.9 120 45.8
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 9.9e-14 83.2 53 73.6
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 4.1e-12 77.8 45 75.6
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 5.4e-12 77.4 178 35.4
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 7.1e-12 77.0 37 83.8
MD00G1188100 Malus domestica HOM05D004228 ORTHO05D043558 7.3e-09 67.0 30 93.3
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 2.1e-08 65.5 56 58.9
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 2.8e-08 65.1 44 61.4
arahy.Tifrunner.gnm1.ann1.H1NXHC Arachis hypogaea HOM05D000009 ORTHO05D000008 2.6e-06 58.5 38 73.7


User provided reference genes

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