Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 5.4e-165 584.3 309 100.0
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 2.0e-151 539.3 309 90.9
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 2.5e-146 522.3 309 88.7
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 3.4e-143 511.9 310 82.6
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 5.8e-143 511.1 310 82.6
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 5.4e-141 504.6 310 81.3
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 2.7e-140 502.3 306 80.7
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.1e-138 496.9 263 90.1
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 1.1e-138 496.9 313 78.9
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 1.9e-138 496.1 305 79.7
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 4.3e-138 495.0 306 79.7
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 1.6e-137 493.0 309 78.3
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 2.1e-137 492.7 306 79.1
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 2.8e-137 492.3 312 78.5
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 2.8e-137 492.3 306 80.4
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.6e-137 491.9 311 78.5
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.1e-136 490.3 311 78.1
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.1e-136 490.3 262 88.2
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 2.3e-136 489.2 304 79.3
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 5.2e-136 488.0 263 88.2
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 5.2e-136 488.0 261 88.1
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 1.5e-135 486.5 262 88.9
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 2.0e-135 486.1 305 79.0
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 9.9e-135 483.8 263 87.5
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.3e-134 483.4 265 87.9
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 1.7e-134 483.0 263 87.1
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 3.7e-134 481.9 264 85.2
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 1.1e-133 480.3 261 87.4
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.4e-133 479.9 264 87.5
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 3.2e-133 478.8 318 76.1
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.1e-133 478.4 262 86.3
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 7.1e-133 477.6 263 87.5
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 2.1e-132 476.1 263 84.4
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 3.5e-132 475.3 254 89.0
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 3.5e-132 475.3 255 87.8
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 1.0e-131 473.8 311 77.2
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.0e-131 473.8 263 84.8
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 1.3e-131 473.4 262 85.1
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.7e-131 473.0 263 86.3
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 3.0e-131 472.2 262 84.7
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 3.0e-131 472.2 262 85.1
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 3.0e-131 472.2 263 85.9
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 3.9e-131 471.9 261 84.7
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 3.9e-131 471.9 261 84.7
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 3.9e-131 471.9 261 86.2
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 3.9e-131 471.9 262 85.1
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 8.6e-131 470.7 262 82.4
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 8.6e-131 470.7 255 85.9
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 1.1e-130 470.3 262 85.1
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 1.5e-130 469.9 262 84.7
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 2.5e-130 469.2 262 85.1
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 3.3e-130 468.8 264 83.7
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 4.3e-130 468.4 264 83.7
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 2.8e-129 465.7 306 75.5
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 3.6e-129 465.3 262 84.4
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 4.7e-129 464.9 262 84.4
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 8.1e-129 464.2 263 81.7
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.1e-128 463.8 262 84.4
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 1.4e-128 463.4 304 74.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 2.4e-128 462.6 261 83.1
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.4e-128 462.6 261 83.1
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.4e-128 462.6 262 84.4
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 3.1e-128 462.2 262 83.6
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 3.1e-128 462.2 262 81.7
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 5.2e-128 461.5 263 83.7
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 8.9e-128 460.7 262 83.2
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 8.9e-128 460.7 262 82.1
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 2.6e-127 459.1 262 82.8
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 7.6e-127 457.6 307 72.3
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 1.3e-126 456.8 254 84.6
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 3.8e-126 455.3 263 82.5
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 4.9e-126 454.9 263 82.5
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 4.9e-126 454.9 262 82.8
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 6.4e-126 454.5 251 84.9
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 8.4e-126 454.1 261 83.1
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 8.4e-126 454.1 263 81.7
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.6e-124 449.9 263 79.8
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 2.1e-124 449.5 263 81.4
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 2.1e-124 449.5 262 80.9
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 2.7e-124 449.1 243 86.4
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 2.7e-124 449.1 243 86.4
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 6.0e-124 448.0 263 79.5
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 6.0e-124 448.0 243 86.4
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 2.3e-123 446.0 263 80.2
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 3.9e-123 445.3 263 79.5
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 5.1e-123 444.9 263 79.5
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 5.1e-123 444.9 263 80.2
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 6.6e-123 444.5 263 79.8
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.5e-122 443.4 263 78.3
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 1.5e-122 443.4 263 79.5
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 9.6e-122 440.7 243 85.6
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 9.6e-122 440.7 263 77.2
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 3.6e-121 438.7 264 80.7
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 9.9e-119 430.6 261 80.1
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 4.6e-116 421.8 263 77.9
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 2.3e-115 419.5 252 79.0
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 4.5e-111 405.2 285 75.4
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 2.1e-108 396.4 219 86.8
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 1.8e-104 383.3 261 69.3
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 1.2e-103 380.6 261 68.6
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 6.5e-102 374.8 261 65.5
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 6.5e-102 374.8 259 67.6
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 1.2e-100 370.5 190 94.7
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 1.3e-99 367.1 256 67.6
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 2.3e-99 366.3 227 80.2
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 5.1e-99 365.2 192 91.1
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.3e-97 360.5 198 87.4
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 2.2e-94 349.7 266 62.8
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 1.3e-91 340.5 192 83.3
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 6.7e-91 338.2 192 82.8
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 5.7e-90 335.1 190 83.2
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 2.9e-86 322.8 263 59.7
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 5.5e-85 318.5 177 83.1
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 6.1e-84 315.1 256 60.2
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.0e-83 314.3 226 67.3
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 6.7e-83 311.6 187 80.2
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 5.3e-80 302.0 243 58.8
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 7.7e-79 298.1 209 72.7
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.3e-67 260.0 256 52.0
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 4.8e-65 252.3 188 68.6
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 2.9e-62 243.0 138 82.6
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 7.2e-61 238.4 259 52.9
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 1.1e-37 161.4 85 89.4
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 5.6e-37 159.1 121 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.8e-36 156.8 276 37.3
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 5.2e-27 125.9 66 83.3
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.2e-23 114.8 325 28.9
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 9.5e-21 105.1 65 73.8
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 3.1e-19 100.1 274 31.4
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 4.1e-16 89.7 104 54.8
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 6.6e-14 82.4 59 66.1


User provided reference genes

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