Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G103600 Prunus persica HOM05D005382 ORTHO05D006795 1.0e-76 290.0 148 100.0
MD17G1226400 Malus domestica HOM05D005382 ORTHO05D006795 6.5e-68 260.8 148 91.2
MD09G1227600 Malus domestica HOM05D005382 ORTHO05D006795 5.5e-67 257.7 148 89.2
Potri.001G041900 Populus trichocarpa HOM05D005382 ORTHO05D006795 9.7e-64 246.9 153 84.3
FAN02G4537 Fragaria x ananassa HOM05D005382 ORTHO05D006795 2.8e-63 245.4 149 85.9
RcHm_v2.0_Chr2g0132311 Rosa chinensis HOM05D005382 ORTHO05D006795 2.8e-63 245.4 149 85.2
FAN05G5289 Fragaria x ananassa HOM05D005382 ORTHO05D006795 3.7e-63 245.0 149 85.9
Manes.04G100900 Manihot esculenta HOM05D005382 ORTHO05D006795 4.8e-63 244.6 148 83.1
Potri.003G184925 Populus trichocarpa HOM05D005382 ORTHO05D006795 6.3e-63 244.2 153 84.3
FAN09G0036 Fragaria x ananassa HOM05D005382 ORTHO05D006795 8.2e-63 243.8 148 84.5
FvH4_6g28270 Fragaria vesca HOM05D005382 ORTHO05D006795 1.1e-62 243.4 149 85.2
COL.COLO4_26772 Corchorus olitorius HOM05D005382 ORTHO05D006795 1.4e-62 243.0 143 86.0
Manes.11G069200 Manihot esculenta HOM05D005382 ORTHO05D006795 1.4e-62 243.0 153 83.0
Haze_16689 Corylus avellana HOM05D005382 ORTHO05D006795 3.1e-62 241.9 147 82.3
Thecc.06G046600 Theobroma cacao HOM05D005382 ORTHO05D006795 9.1e-62 240.4 143 84.6
Cfa001857 Carpinus fangiana HOM05D005382 ORTHO05D006795 1.6e-61 239.6 147 81.6
Sabra01G0028700 Salix brachista HOM05D005382 ORTHO05D006795 3.5e-61 238.4 153 81.7
Cc04_g05300 Coffea canephora HOM05D005382 ORTHO05D006795 5.9e-61 237.7 149 83.9
CiPaw.01G256500 Carya illinoinensis HOM05D005382 ORTHO05D006795 7.7e-61 237.3 148 79.7
Gorai.007G085500 Gossypium raimondii HOM05D005382 ORTHO05D006795 1.3e-60 236.5 143 86.0
QL05p036845 Quercus lobata HOM05D005382 ORTHO05D006795 2.2e-60 235.7 144 81.2
Gohir.A11G075200 Gossypium hirsutum HOM05D005382 ORTHO05D006795 3.8e-60 235.0 143 85.3
Sabra03G0135500 Salix brachista HOM05D005382 ORTHO05D006795 3.8e-60 235.0 153 82.4
Duzib192G0805 Durio zibethinus HOM05D005382 ORTHO05D006795 5.0e-60 234.6 146 83.6
Duzib235G0288 Durio zibethinus HOM05D005382 ORTHO05D006795 8.5e-60 233.8 146 82.9
Rhsim08G0203100 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.9e-59 232.6 146 80.8
PGR102G0492 Punica granatum HOM05D005382 ORTHO05D006795 4.2e-59 231.5 141 82.3
CsaV3_7G031710 Cucumis sativus L. HOM05D005382 ORTHO05D006795 9.4e-59 230.3 141 84.4
MELO3C023486.2 Cucumis melo HOM05D005382 ORTHO05D006795 1.2e-58 229.9 138 85.5
Glyma.08G220400 Glycine max HOM05D005382 ORTHO05D006795 1.2e-58 229.9 139 82.0
Phvul.008G253200 Phaseolus vulgaris HOM05D005382 ORTHO05D006795 1.2e-58 229.9 139 81.3
Sed0008280 Sechium edule HOM05D005382 ORTHO05D006795 1.2e-58 229.9 141 83.7
CSS0039254 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.6e-58 229.6 142 81.7
CiPaw.02G163400 Carya illinoinensis HOM05D005382 ORTHO05D006795 1.6e-58 229.6 147 77.6
Nitab4.5_0002700g0060 Nicotiana tabacum HOM05D005382 ORTHO05D006795 1.6e-58 229.6 146 79.5
Actinidia08935 Actinidia chinensis HOM05D005382 ORTHO05D006795 2.1e-58 229.2 145 80.7
CAN.G1008.7 Capsicum annuum HOM05D005382 ORTHO05D006795 2.1e-58 229.2 145 77.2
THA.LOC104808172 Tarenaya hassleriana HOM05D005382 ORTHO05D006795 2.1e-58 229.2 149 77.9
Lj3g0027435 Lotus japonicus HOM05D005382 ORTHO05D006795 2.7e-58 228.8 147 78.9
TWI75G0559 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 2.7e-58 228.8 140 82.9
MSTRG.22842 Avicennia marina HOM05D005382 ORTHO05D006795 3.6e-58 228.4 136 83.1
vmacro16842 Vaccinium macrocarpon HOM05D005382 ORTHO05D006795 3.6e-58 228.4 148 78.4
Nn8g40079 Nelumbo nucifera HOM05D005382 ORTHO05D006795 4.7e-58 228.0 137 83.2
Peaxi162Scf00314g01032 Petunia axillaris HOM05D005382 ORTHO05D006795 4.7e-58 228.0 140 80.0
Ciclev10026461m.g Citrus clementina HOM05D005382 ORTHO05D006795 6.1e-58 227.6 147 81.0
Glyma.07G021400 Glycine max HOM05D005382 ORTHO05D006795 6.1e-58 227.6 139 81.3
Lj5A81T85 Lonicera japonica HOM05D005382 ORTHO05D006795 8.0e-58 227.3 142 78.9
Nitab4.5_0004738g0090 Nicotiana tabacum HOM05D005382 ORTHO05D006795 8.0e-58 227.3 146 78.8
TWI12G1456 Tripterygium wilfordii HOM05D005382 ORTHO05D006795 8.0e-58 227.3 149 78.5
ClCG09G003490 Citrullus lanatus HOM05D005382 ORTHO05D006795 1.0e-57 226.9 138 84.8
SGA_v2.0_scaffold515G52664 Striga asiatica HOM05D003096 ORTHO05D003521 1.4e-57 226.5 138 82.6
Rhsim12G0185400 Rhododendron simsii HOM05D005382 ORTHO05D006795 1.8e-57 226.1 141 80.1
VMungo0647G2390 Vigna mungo HOM05D005382 ORTHO05D006795 1.8e-57 226.1 139 80.6
Aa31LG4G1250 Aethionema arabicum HOM05D005382 ORTHO05D006795 2.3e-57 225.7 149 78.5
TAR625G1145 Trochodendron aralioides HOM05D005382 ORTHO05D006795 2.3e-57 225.7 141 80.1
Sopen03g036580 Solanum pennellii HOM05D005382 ORTHO05D006795 3.0e-57 225.3 140 78.6
MSTRG.9395 Avicennia marina HOM05D005382 ORTHO05D006795 4.0e-57 224.9 133 84.2
Solyc03g117670.4 Solanum lycopersicum HOM05D005382 ORTHO05D006795 5.2e-57 224.6 140 78.6
MSTRG.11221 Avicennia marina HOM05D005382 ORTHO05D006795 6.7e-57 224.2 137 81.8
Medtr4g007700 Medicago truncatula HOM05D005382 ORTHO05D006795 6.7e-57 224.2 137 82.5
SalBow1G1272 Salvia bowleyana HOM05D005382 ORTHO05D006795 8.8e-57 223.8 137 82.5
Migut.I00626 Erythranthe guttata HOM05D005382 ORTHO05D006795 1.2e-56 223.4 141 78.7
Nn8g40087 Nelumbo nucifera HOM05D005382 ORTHO05D006795 1.2e-56 223.4 137 81.8
PGSC0003DMG400014155 Solanum tuberosum HOM05D005382 ORTHO05D006795 1.5e-56 223.0 140 77.9
Hma1.2p1_0329F.1_g127290 Hydrangea macrophylla HOM05D005382 ORTHO05D006795 2.6e-56 222.2 147 76.2
CARHR073510 Cardamine hirsuta HOM05D005382 ORTHO05D006795 3.3e-56 221.9 148 77.7
AT1G80940 Arabidopsis thaliana HOM05D005382 ORTHO05D006795 4.4e-56 221.5 148 77.0
Lalb_Chr25g0278731 Lupinus albus HOM05D005382 ORTHO05D006795 5.7e-56 221.1 143 76.9
Oeu003125.1 Olea europaea HOM05D005382 ORTHO05D006795 5.7e-56 221.1 139 80.6
C06p29630 Brassica napus HOM05D005382 ORTHO05D006795 9.7e-56 220.3 142 77.5
BolC6t38128H Brassica oleracea HOM05D005382 ORTHO05D006795 9.7e-56 220.3 142 77.5
ECA232G4196 Erigeron canadensis HOM05D005382 ORTHO05D006795 9.7e-56 220.3 149 76.5
FAN14G0578 Fragaria x ananassa HOM05D005382 ORTHO05D006795 9.7e-56 220.3 125 88.8
HanXRQChr04g0100021 Helianthus annuus HOM05D005382 ORTHO05D006795 9.7e-56 220.3 145 75.2
DCAR_021374 Daucus carota HOM05D005382 ORTHO05D006795 1.7e-55 219.5 146 77.4
Eucgr.F03985 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.7e-55 219.5 148 77.7
Thhalv10019121m.g Eutrema salsugineum HOM05D005382 ORTHO05D006795 1.7e-55 219.5 148 75.7
BcaNung04166 Brassica carinata HOM05D005382 ORTHO05D006795 2.2e-55 219.2 148 75.7
A07p26960 Brassica napus HOM05D005382 ORTHO05D006795 2.2e-55 219.2 148 75.7
BraA07t30340Z Brassica rapa HOM05D005382 ORTHO05D006795 2.2e-55 219.2 148 75.7
Oeu051555.1 Olea europaea HOM05D005382 ORTHO05D006795 2.2e-55 219.2 139 80.6
Sp5g34800 Schrenkiella parvula HOM05D005382 ORTHO05D006795 2.2e-55 219.2 141 77.3
Gohir.D11G079900 Gossypium hirsutum HOM05D005382 ORTHO05D006795 2.8e-55 218.8 123 90.2
Carub.0002s2660 Capsella rubella HOM05D005382 ORTHO05D006795 4.8e-55 218.0 148 75.7
Lsat_1_v5_gn_4_85061 Lactuca sativa HOM05D005382 ORTHO05D006795 4.8e-55 218.0 140 80.7
BcaC08g47533 Brassica carinata HOM05D005382 ORTHO05D006795 6.3e-55 217.6 143 77.6
BolC6t40373H Brassica oleracea HOM05D005382 ORTHO05D006795 6.3e-55 217.6 143 77.6
BcaB02g07237 Brassica carinata HOM05D005382 ORTHO05D006795 8.2e-55 217.2 131 82.4
BcaB02g08711 Brassica carinata HOM05D005382 ORTHO05D006795 8.2e-55 217.2 143 78.3
AL2G40440 Arabidopsis lyrata HOM05D005382 ORTHO05D006795 1.1e-54 216.9 138 79.7
EL10Ac8g19398 Beta vulgaris HOM05D005382 ORTHO05D006795 1.4e-54 216.5 143 76.2
ECA247G2189 Erigeron canadensis HOM05D005382 ORTHO05D006795 1.4e-54 216.5 142 75.4
Eucgr.J03130 Eucalyptus grandis HOM05D005382 ORTHO05D006795 1.4e-54 216.5 147 74.1
Sc12g0008250 Simmondsia chinensis HOM05D005382 ORTHO05D006795 1.4e-54 216.5 149 76.5
A07p44750 Brassica napus HOM05D005382 ORTHO05D006795 1.8e-54 216.1 143 77.6
Lsat_1_v5_gn_1_30801 Lactuca sativa HOM05D005382 ORTHO05D006795 2.4e-54 215.7 137 79.6
C06p53570 Brassica napus HOM05D005382 ORTHO05D006795 3.1e-54 215.3 132 81.1
HanXRQChr09g0274181 Helianthus annuus HOM05D005382 ORTHO05D006795 3.1e-54 215.3 144 77.1
CDE04G1090 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 4.1e-54 214.9 142 81.0
BraA07t31983Z Brassica rapa HOM05D005382 ORTHO05D006795 9.1e-54 213.8 143 76.9
CDE07G1687 Ceratophyllum demersum HOM05D005382 ORTHO05D006795 1.2e-53 213.4 137 80.3
Dinv21426 Davidia involucrata HOM05D005382 ORTHO05D006795 2.0e-53 212.6 139 78.4
AUR62032996 Chenopodium quinoa HOM05D005382 ORTHO05D006795 3.5e-53 211.8 139 77.0
PSO782G0145 Papaver somniferum HOM05D005382 ORTHO05D006795 4.5e-53 211.5 142 77.5
SGA_v2.0_scaffold74G24593 Striga asiatica HOM05D005382 ORTHO05D006795 5.9e-53 211.1 132 79.5
AUR62034069 Chenopodium quinoa HOM05D007611 ORTHO05D006795 7.7e-53 210.7 143 74.8
GSVIVG01016103001 Vitis vinifera HOM05D005382 ORTHO05D006795 6.5e-52 207.6 145 75.9
TPR.G3367 Trifolium pratense HOM05D005382 ORTHO05D006795 8.5e-52 207.2 124 83.1
PSO063G0682 Papaver somniferum HOM05D005382 ORTHO05D006795 1.1e-51 206.8 142 76.1
MBI15_g08404_MAGBIO Magnolia biondii HOM05D005382 ORTHO05D006795 4.2e-51 204.9 150 74.7
Psat7g262200 Pisum sativum HOM05D005382 ORTHO05D006795 7.2e-51 204.1 123 82.9
Lalb_Chr01g0011991 Lupinus albus HOM05D005382 ORTHO05D006795 2.7e-50 202.2 141 70.9
Os02g0793900 Oryza sativa ssp. japonica HOM05D005382 ORTHO05D006795 4.0e-49 198.4 142 72.5
Zm00001eb257680 Zea mays HOM05D005382 ORTHO05D006795 8.8e-49 197.2 142 71.8
HPP92_010348 Vanilla planifolia HOM05D005382 ORTHO05D006795 5.7e-48 194.5 139 74.1
Cpa.g.c28380.1 Carica papaya HOM05D005382 ORTHO05D006795 2.2e-47 192.6 127 76.4
ATR0580G392 Amborella trichopoda HOM05D005382 ORTHO05D006795 2.8e-47 192.2 140 73.6
arahy.Tifrunner.gnm1.ann1.7IZ6IW Arachis hypogaea HOM05D005382 ORTHO05D006795 1.8e-46 189.5 146 70.5
arahy.Tifrunner.gnm1.ann1.HUQR60 Arachis hypogaea HOM05D005382 ORTHO05D006795 1.8e-46 189.5 146 70.5
CANSAT56G2690 Cannabis sativa HOM05D005382 ORTHO05D006795 1.6e-45 186.4 139 69.8
SEGI_41275 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.1e-43 180.3 133 70.7
SMO145G0139 Selaginella moellendorffii HOM05D005382 ORTHO05D006795 1.9e-43 179.5 133 66.9
Pp3c16_25700 Physcomitrium patens HOM05D005382 ORTHO05D006795 9.5e-43 177.2 135 68.1
Mapoly0128s0009 Marchantia polymorpha HOM05D005382 ORTHO05D006795 1.6e-42 176.4 133 69.9
Pp3c25_9780 Physcomitrium patens HOM05D005382 ORTHO05D006795 3.0e-41 172.2 135 66.7
Ah.14g085670 Amaranthus hybridus HOM05D005382 ORTHO05D006795 1.5e-40 169.9 143 64.3
SEGI_02613 Sequoiadendron giganteum HOM05D005382 ORTHO05D006795 1.0e-33 147.1 114 65.8
CSS0015514 Camellia sinensis var. sinensis HOM05D005382 ORTHO05D006795 1.0e-28 130.6 74 87.8
Hund12559 Selenicereus undatus HOM05D005382 ORTHO05D006795 8.6e-28 127.5 75 81.3
BcaB07g33703 Brassica carinata HOM05D005382 ORTHO05D006795 2.1e-26 122.9 74 79.7
unitig_22.g6275 Utricularia gibba HOM05D005382 ORTHO05D006795 6.2e-26 121.3 77 80.5
Actinidia36864 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.4e-25 120.2 138 51.4
BcaB07g33704 Brassica carinata HOM05D005382 ORTHO05D006795 1.1e-22 110.5 64 81.2
BcaB07g33705 Brassica carinata HOM05D005382 ORTHO05D006795 1.1e-22 110.5 64 81.2
Atru.chr1.2804_Atru.chr1.2805 Acer truncatum HOM05D005382 ORTHO05D006795 4.1e-22 108.6 141 51.8
Actinidia26580 Actinidia chinensis HOM05D005382 ORTHO05D006795 1.2e-16 90.5 70 67.1
AagrBONN_evm.TU.Sc2ySwM_117.2014 Anthoceros agrestis HOM05D005382 ORTHO05D006795 2.0e-16 89.7 72 68.1
TPR.G1583 Trifolium pratense HOM05D005382 ORTHO05D006795 7.3e-11 71.2 45 77.8


User provided reference genes

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