Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 1.5e-38 162.5 92 100.0
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 7.7e-35 150.2 90 86.7
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 7.5e-30 133.7 90 83.3
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 9.7e-30 133.3 94 81.9
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 3.1e-28 128.3 92 69.6
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 4.1e-28 127.9 72 88.9
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.5e-27 124.8 92 69.6
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 7.7e-27 123.6 92 69.6
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 8.5e-26 120.2 92 70.7
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 8.5e-26 120.2 92 73.9
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 1.5e-25 119.4 92 65.2
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 3.2e-25 118.2 70 77.1
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 3.2e-25 118.2 90 66.7
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 4.2e-25 117.9 92 64.1
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 9.4e-25 116.7 92 62.0
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 2.1e-24 115.5 69 78.3
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 3.6e-24 114.8 85 65.9
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 3.6e-24 114.8 71 71.8
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 3.6e-24 114.8 68 73.5
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 4.7e-24 114.4 92 62.0
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 4.7e-24 114.4 92 60.9
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 6.1e-24 114.0 82 68.3
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 6.1e-24 114.0 69 73.9
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 8.0e-24 113.6 92 63.0
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 1.0e-23 113.2 69 73.9
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.0e-23 113.2 85 65.9
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.0e-23 113.2 92 65.2
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 1.4e-23 112.8 71 71.8
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 1.4e-23 112.8 92 62.0
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 1.4e-23 112.8 70 71.4
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 1.4e-23 112.8 92 62.0
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 1.8e-23 112.5 68 73.5
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.8e-23 112.5 85 64.7
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 3.0e-23 111.7 92 60.9
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 3.0e-23 111.7 92 60.9
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 4.0e-23 111.3 69 73.9
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 5.2e-23 110.9 70 70.0
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 6.8e-23 110.5 67 70.1
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 6.8e-23 110.5 68 73.5
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 8.8e-23 110.2 85 63.5
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 8.8e-23 110.2 92 58.7
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.2e-22 109.8 71 71.8
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 2.0e-22 109.0 92 59.8
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.0e-22 109.0 69 71.0
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 4.4e-22 107.8 68 70.6
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 5.7e-22 107.5 92 62.0
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 5.7e-22 107.5 85 58.8
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 5.7e-22 107.5 85 58.8
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 7.5e-22 107.1 71 69.0
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 9.8e-22 106.7 92 57.6
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 9.8e-22 106.7 85 61.2
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.3e-21 106.3 66 75.8
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 2.2e-21 105.5 91 60.4
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 2.2e-21 105.5 69 69.6
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 2.2e-21 105.5 68 70.6
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 2.2e-21 105.5 88 56.8
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 2.2e-21 105.5 71 67.6
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 3.7e-21 104.8 89 57.3
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 4.8e-21 104.4 85 67.1
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 4.8e-21 104.4 70 65.7
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.1e-20 103.2 88 56.8
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 1.1e-20 103.2 103 58.3
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.4e-20 102.8 64 67.2
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.4e-20 102.8 72 73.6
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 3.1e-20 101.7 69 68.1
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 4.1e-20 101.3 72 72.2
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 4.1e-20 101.3 72 73.6
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 4.1e-20 101.3 72 72.2
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 7.0e-20 100.5 57 77.2
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 2.7e-19 98.6 70 61.4
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 1.0e-18 96.7 85 54.1
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 2.9e-18 95.1 71 64.8
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 6.5e-18 94.0 74 58.1
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 8.5e-18 93.6 66 59.1
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.5e-17 92.8 71 59.2
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 3.6e-16 88.2 92 55.4
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 2.3e-15 85.5 50 70.0
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.3e-15 85.5 70 55.7
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 5.2e-15 84.3 67 56.7
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 1.5e-14 82.8 83 50.6
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 2.0e-14 82.4 73 56.2
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 4.4e-14 81.3 46 76.1
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 9.8e-14 80.1 68 52.9
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 9.8e-14 80.1 68 52.9
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 9.8e-14 80.1 68 52.9
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 9.8e-14 80.1 92 48.9
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 2.2e-13 79.0 67 56.7
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 4.9e-13 77.8 90 47.8
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 8.3e-13 77.0 67 56.7
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 8.3e-13 77.0 67 52.2
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 8.3e-13 77.0 67 52.2
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.4e-12 76.3 91 45.1
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.4e-12 76.3 70 50.0
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 1.4e-12 76.3 57 54.4
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 1.8e-12 75.9 46 71.7
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.4e-12 75.5 70 54.3
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 3.1e-12 75.1 71 53.5
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 4.1e-12 74.7 67 50.7
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 7.0e-12 73.9 46 63.0
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 1.6e-11 72.8 46 63.0
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 1.6e-11 72.8 61 73.8
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 2.0e-11 72.4 41 75.6
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 2.7e-11 72.0 65 52.3
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 2.7e-11 72.0 102 35.3
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 2.7e-11 72.0 54 61.1
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 3.5e-11 71.6 62 56.5
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 3.5e-11 71.6 39 71.8
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 5.9e-11 70.9 65 50.8
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 5.9e-11 70.9 79 48.1
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 5.9e-11 70.9 65 50.8
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 5.9e-11 70.9 65 50.8
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 5.9e-11 70.9 60 51.7
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 1.3e-10 69.7 63 44.4
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 2.3e-10 68.9 38 71.1
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 5.0e-10 67.8 56 53.6
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 8.6e-10 67.0 65 53.8
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 1.5e-09 66.2 63 49.2
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 2.5e-09 65.5 62 51.6
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 2.1e-08 62.4 40 60.0
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 2.8e-08 62.0 62 56.5
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 3.6e-08 61.6 42 54.8
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 8.0e-08 60.5 42 52.4
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.0e-07 58.5 48 43.8
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 3.0e-07 58.5 61 45.9
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 6.8e-07 57.4 44 50.0
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 8.9e-07 57.0 65 43.1
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 2.6e-06 55.5 45 42.2


User provided reference genes

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