Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 4.1e-95 351.3 165 100.0
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 1.3e-80 303.1 165 87.3
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 1.1e-79 300.1 161 87.6
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.1e-79 300.1 161 87.6
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.8e-79 299.3 161 87.0
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 1.2e-78 296.6 165 83.0
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 5.0e-77 291.2 162 80.9
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 1.9e-76 289.3 165 81.2
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 2.5e-76 288.9 165 81.2
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 3.2e-76 288.5 160 85.6
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 4.2e-76 288.1 165 80.6
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 1.2e-75 286.6 162 82.7
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 1.2e-75 286.6 162 80.9
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 6.1e-75 284.3 165 80.6
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 6.1e-75 284.3 165 80.6
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 8.0e-75 283.9 165 80.6
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 1.0e-74 283.5 161 80.7
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 1.4e-74 283.1 161 82.6
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 1.4e-74 283.1 165 78.8
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 4.0e-74 281.6 165 79.4
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 4.0e-74 281.6 166 80.1
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 4.0e-74 281.6 165 78.8
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 5.2e-74 281.2 162 79.6
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 5.2e-74 281.2 165 78.2
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 6.8e-74 280.8 161 80.1
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 8.8e-74 280.4 162 78.4
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 1.2e-73 280.0 165 79.4
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 1.2e-73 280.0 165 77.6
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 1.2e-73 280.0 166 80.1
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 2.6e-73 278.9 162 79.6
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 80.0
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 2.6e-73 278.9 165 78.8
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 5.7e-73 277.7 165 77.6
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 7.5e-73 277.3 166 78.3
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 7.5e-73 277.3 165 77.6
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 7.5e-73 277.3 165 77.6
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 7.5e-73 277.3 165 78.2
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 7.5e-73 277.3 165 78.2
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 9.8e-73 276.9 162 79.0
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 1.3e-72 276.6 165 77.0
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 1.7e-72 276.2 165 76.4
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 1.7e-72 276.2 165 77.0
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 2.2e-72 275.8 162 77.8
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 2.8e-72 275.4 165 77.0
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 2.8e-72 275.4 162 78.4
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 2.8e-72 275.4 165 78.2
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 3.7e-72 275.0 161 78.9
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 3.7e-72 275.0 165 78.2
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 3.7e-72 275.0 163 79.1
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 4.9e-72 274.6 165 77.0
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 4.9e-72 274.6 162 77.2
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 6.3e-72 274.2 165 77.0
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 6.3e-72 274.2 165 77.0
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 8.3e-72 273.9 161 77.6
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 8.3e-72 273.9 161 75.2
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 8.3e-72 273.9 162 77.8
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 1.1e-71 273.5 162 76.5
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 1.8e-71 272.7 165 77.6
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 3.1e-71 271.9 161 77.6
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 3.1e-71 271.9 162 77.2
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 7.0e-71 270.8 165 75.8
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 9.2e-71 270.4 165 76.4
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 1.2e-70 270.0 165 77.0
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 1.6e-70 269.6 165 75.2
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 1.6e-70 269.6 165 75.8
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 4.5e-70 268.1 165 75.8
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 4.5e-70 268.1 165 76.4
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 4.5e-70 268.1 165 75.8
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 1.0e-69 266.9 165 74.5
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 1.7e-69 266.2 158 78.5
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 6.6e-69 264.2 165 75.8
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 8.6e-69 263.8 165 75.8
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 8.6e-69 263.8 165 74.5
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 8.6e-69 263.8 165 73.9
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 3.6e-67 258.5 162 74.1
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 8.0e-67 257.3 164 70.1
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 1.4e-66 256.5 155 77.4
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 1.2e-65 253.4 162 70.4
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 6.6e-61 237.7 202 59.4
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 1.9e-60 236.1 161 70.8
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 1.9e-60 236.1 158 70.9
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 1.4e-58 229.9 165 69.1
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 4.4e-57 224.9 258 48.4
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 1.7e-56 223.0 156 66.0
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 7.8e-54 214.2 142 69.7
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 7.8e-54 214.2 126 82.5
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 5.6e-52 208.0 117 82.1
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 2.0e-49 199.5 160 60.6
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 2.2e-48 196.1 159 58.5
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 2.3e-45 186.0 153 58.2
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 6.6e-45 184.5 109 81.7
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 3.3e-44 182.2 159 55.3
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 9.9e-41 170.6 83 90.4
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 2.7e-38 162.5 82 89.0
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 9.6e-36 154.1 83 86.7
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 3.1e-34 149.1 91 70.3
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 1.5e-33 146.7 91 71.4
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 7.6e-33 144.4 115 64.3
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 7.6e-33 144.4 81 84.0
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 1.7e-32 143.3 82 75.6
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 1.6e-30 136.7 94 68.1
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 3.5e-30 135.6 96 68.8
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 3.5e-30 135.6 82 72.0
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 1.9e-28 129.8 82 69.5
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 5.3e-18 95.1 71 67.6
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 3.1e-10 69.3 43 72.1


User provided reference genes

Program Settings