Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 2.3e-57 225.3 113 100.0
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 1.2e-48 196.4 113 85.8
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.6e-42 174.9 113 77.0
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 8.0e-42 173.7 113 76.1
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 8.0e-42 173.7 113 76.1
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 1.0e-41 173.3 113 75.2
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 2.0e-40 169.1 113 73.5
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 1.5e-35 152.9 107 72.0
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 1.9e-35 152.5 111 64.0
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 2.1e-34 149.1 99 75.8
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 5.2e-33 144.4 111 64.0
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 1.3e-31 139.8 105 65.7
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 2.8e-31 138.7 106 65.1
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 3.7e-31 138.3 97 62.9
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 3.7e-31 138.3 106 66.0
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 6.3e-31 137.5 112 62.5
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 8.3e-31 137.1 97 62.9
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 1.1e-30 136.7 103 66.0
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 2.4e-30 135.6 95 63.2
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 2.4e-30 135.6 95 63.2
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 2.4e-30 135.6 100 68.0
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 3.1e-30 135.2 106 64.2
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 5.4e-30 134.4 105 64.8
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 9.2e-30 133.7 106 64.2
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 3.5e-29 131.7 113 55.8
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 5.9e-29 131.0 106 62.3
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 7.8e-29 130.6 115 60.9
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 7.8e-29 130.6 92 66.3
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 7.8e-29 130.6 92 66.3
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 7.8e-29 130.6 115 58.3
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.0e-28 130.2 106 62.3
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.0e-28 130.2 94 67.0
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 2.9e-28 128.6 101 55.4
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 3.8e-28 128.3 109 57.8
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 3.8e-28 128.3 103 59.2
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 5.0e-28 127.9 93 67.7
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 6.6e-28 127.5 92 66.3
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 8.6e-28 127.1 94 64.9
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 1.1e-27 126.7 103 60.2
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 1.5e-27 126.3 93 65.6
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 1.5e-27 126.3 94 63.8
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 3.3e-27 125.2 94 66.0
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 5.6e-27 124.4 90 65.6
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 5.6e-27 124.4 93 65.6
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 9.5e-27 123.6 93 65.6
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 1.2e-26 123.2 107 60.7
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.2e-26 123.2 94 64.9
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 1.6e-26 122.9 93 63.4
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 2.1e-26 122.5 90 65.6
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 2.1e-26 122.5 90 65.6
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 2.8e-26 122.1 103 57.3
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 3.6e-26 121.7 90 64.4
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 3.6e-26 121.7 96 59.4
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 3.6e-26 121.7 94 64.9
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 4.7e-26 121.3 92 62.0
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 1.0e-25 120.2 92 66.3
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 1.4e-25 119.8 91 62.6
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 1.8e-25 119.4 90 63.3
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 1.8e-25 119.4 93 62.4
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 2.3e-25 119.0 82 74.4
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 5.2e-25 117.9 90 63.3
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 5.2e-25 117.9 92 60.9
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 6.8e-25 117.5 92 63.0
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 1.2e-24 116.7 95 62.1
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 1.5e-24 116.3 95 60.0
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 2.0e-24 115.9 97 60.8
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 2.0e-24 115.9 92 62.0
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 5.7e-24 114.4 86 67.4
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 7.5e-24 114.0 92 59.8
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 1.7e-23 112.8 97 58.8
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 1.7e-23 112.8 92 59.8
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 4.9e-23 111.3 90 61.1
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 1.4e-22 109.8 94 58.5
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 1.6e-21 106.3 108 49.1
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 3.5e-21 105.1 97 55.7
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 4.6e-21 104.8 117 47.0
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 5.9e-21 104.4 95 58.9
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 1.7e-20 102.8 95 55.8
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 3.9e-20 101.7 95 54.7
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 6.6e-20 100.9 99 49.5
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 1.5e-19 99.8 89 51.7
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 1.2e-16 90.1 83 56.6
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 1.2e-16 90.1 83 57.8
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 2.0e-16 89.4 71 64.8
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 5.8e-16 87.8 88 51.1
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 6.4e-15 84.3 92 51.1
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 8.6e-12 73.9 79 51.9
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 2.6e-08 62.4 70 50.0
Hma1.2p1_0586F.1_g183770 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.7e-07 59.7 74 45.9
Hma1.2p1_1595F.1_g292725 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 2.4e-06 55.8 55 58.2


User provided reference genes

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