Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.2e-240 836.3 456 100.0
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 2.6e-155 552.7 471 69.0
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 5.5e-134 481.9 477 63.9
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.3e-130 470.7 461 61.6
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 8.3e-130 468.0 463 60.0
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 1.6e-128 463.8 455 61.1
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 7.7e-128 461.5 460 58.9
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 3.8e-127 459.1 458 61.1
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 3.6e-125 452.6 457 59.5
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.0e-124 451.1 466 58.6
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 1.2e-123 447.6 470 60.0
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 1.3e-122 444.1 475 59.4
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 1.3e-122 444.1 466 58.6
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.8e-121 440.3 456 59.9
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 7.0e-121 438.3 471 60.3
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 2.9e-119 433.0 468 56.6
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 8.6e-119 431.4 461 56.0
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 1.2e-117 427.6 460 55.7
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 4.0e-116 422.5 471 57.5
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.8e-113 413.7 537 51.4
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.1e-110 404.4 478 52.7
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 4.7e-109 399.1 447 53.2
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 8.0e-109 398.3 461 57.0
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 8.9e-108 394.8 458 55.2
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 2.0e-107 393.7 462 53.9
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 2.6e-107 393.3 457 55.8
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.7e-106 390.6 450 55.1
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 2.2e-106 390.2 450 54.9
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 6.4e-106 388.7 491 51.3
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.9e-105 387.1 465 50.8
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.1e-105 386.0 464 54.5
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 4.1e-105 386.0 459 54.5
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 7.0e-105 385.2 450 54.4
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 9.2e-105 384.8 447 53.0
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 9.2e-105 384.8 447 53.0
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.5e-102 377.5 381 57.7
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 3.3e-102 376.3 453 55.2
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 7.3e-102 375.2 464 53.9
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 9.5e-102 374.8 464 54.1
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.6e-101 374.0 464 54.3
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 1.4e-100 370.9 625 44.2
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 5.2e-100 369.0 372 57.5
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 3.4e-99 366.3 469 52.7
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 1.7e-98 364.0 507 50.7
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 2.9e-98 363.2 409 54.3
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 2.9e-98 363.2 386 54.4
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.9e-98 363.2 509 49.7
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 4.9e-98 362.5 455 56.0
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 1.1e-97 361.3 451 48.8
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 7.1e-97 358.6 402 55.2
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 5.1e-95 352.4 461 46.9
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 5.6e-94 349.0 439 52.6
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.2e-93 347.8 465 50.1
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 6.2e-93 345.5 437 46.7
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.1e-92 344.7 458 51.3
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 1.4e-92 344.4 318 58.8
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.8e-92 344.0 440 54.5
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 6.8e-92 342.0 442 46.2
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 2.6e-91 340.1 437 46.0
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 5.8e-91 339.0 412 51.5
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 2.9e-90 336.7 452 49.1
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 8.4e-90 335.1 448 48.4
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-89 334.7 438 46.1
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.7e-88 330.1 459 46.4
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 4.6e-88 329.3 445 45.6
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 1.3e-87 327.8 443 45.4
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 6.6e-87 325.5 414 50.2
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.5e-86 324.3 351 54.1
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 3.3e-86 323.2 449 46.1
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 3.3e-86 323.2 388 51.3
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 5.6e-86 322.4 456 49.6
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 7.3e-86 322.0 453 46.1
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 1.2e-85 321.2 444 47.1
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 2.8e-85 320.1 445 46.1
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 3.6e-85 319.7 410 47.8
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 8.1e-85 318.5 443 46.0
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.4e-84 317.8 461 47.3
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 4.0e-84 316.2 390 51.8
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.2e-83 314.7 455 46.4
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.2e-83 314.7 408 49.0
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 4.4e-83 312.8 420 46.2
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 7.6e-83 312.0 437 46.7
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 1.7e-82 310.8 467 45.8
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.9e-82 310.1 453 45.5
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 2.9e-82 310.1 450 45.1
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.9e-81 307.4 453 48.6
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 2.4e-81 307.0 403 48.6
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 2.4e-81 307.0 450 48.9
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 9.3e-81 305.1 447 45.4
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 9.3e-81 305.1 413 49.2
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 9.3e-81 305.1 442 45.2
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 1.2e-80 304.7 450 48.7
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.6e-80 304.3 403 48.4
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.6e-80 304.3 417 46.8
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.1e-80 303.9 478 44.1
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 2.1e-80 303.9 352 52.0
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 2.7e-80 303.5 218 72.0
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 3.5e-80 303.1 417 48.9
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 3.5e-80 303.1 460 45.7
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 8.7e-79 298.5 434 45.4
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 1.9e-78 297.4 362 49.7
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 5.6e-78 295.8 450 43.1
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 5.6e-78 295.8 442 44.6
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 7.3e-78 295.4 449 43.4
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.3e-77 294.7 449 43.7
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.3e-77 294.7 383 49.1
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 2.8e-77 293.5 401 46.9
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.4e-76 291.2 437 45.3
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 1.4e-76 291.2 450 44.0
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 2.4e-76 290.4 345 49.3
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 9.0e-76 288.5 371 48.8
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.0e-75 287.3 371 47.7
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 2.6e-75 287.0 429 45.0
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 7.6e-75 285.4 362 48.6
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 3.8e-74 283.1 442 42.3
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 4.9e-74 282.7 442 42.1
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 5.4e-73 279.3 454 45.4
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 7.1e-73 278.9 394 47.2
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.2e-72 278.1 378 52.4
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 1.5e-70 271.2 242 60.3
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 2.6e-67 260.4 309 50.5
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 7.6e-67 258.8 497 42.3
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.9e-66 256.1 314 50.3
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 9.6e-62 241.9 282 53.9
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 9.6e-62 241.9 139 84.2
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.8e-61 240.4 483 37.9
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.8e-61 240.4 483 37.9
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 6.9e-60 235.7 442 40.7
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.5e-59 233.0 403 40.7
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 2.1e-56 224.2 396 41.2
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 1.5e-51 208.0 335 46.6
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.6e-48 198.0 112 86.6
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 3.9e-47 193.4 349 43.8
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 8.8e-47 192.2 311 41.8
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.3e-46 189.9 129 72.9
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.3e-46 189.9 129 72.9
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 9.1e-44 182.2 100 89.0
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 5.5e-41 172.9 124 74.2
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.2e-35 155.2 94 79.8
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 1.7e-34 151.4 139 54.7
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 5.0e-34 149.8 141 50.4
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 2.6e-30 137.5 75 88.0
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 4.4e-30 136.7 381 34.9
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 7.0e-28 129.4 147 47.6
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.8e-26 123.6 324 36.1
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.5e-25 121.7 317 35.0
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.3e-21 108.6 63 81.0
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 6.3e-21 106.3 204 39.2
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 8.3e-21 105.9 123 50.4
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 4.1e-20 103.6 66 77.3
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.6e-19 101.7 94 54.3
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 2.2e-18 97.8 122 45.9
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 2.7e-16 90.9 55 83.6
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 6.8e-15 86.3 60 66.7
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.3e-13 82.0 92 50.0
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 2.9e-10 70.9 121 35.5
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.1e-08 64.7 35 77.1
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 2.8e-08 64.3 105 34.3
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 4.7e-08 63.5 51 56.9
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 4.0e-07 60.5 34 73.5
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 1.2e-06 58.9 83 44.6
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 2.0e-06 58.2 67 47.8


User provided reference genes

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