Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 6.2e-140 500.7 245 100.0
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 3.0e-126 455.3 244 92.2
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 6.4e-113 411.0 244 83.2
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 3.5e-111 405.2 248 81.5
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 7.4e-109 397.5 232 83.6
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 1.6e-108 396.4 232 83.6
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.6e-108 396.4 232 83.6
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 8.4e-105 384.0 256 75.8
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 1.8e-99 366.3 217 80.6
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 6.9e-99 364.4 231 74.9
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 9.0e-99 364.0 235 74.9
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 1.2e-98 363.6 221 78.3
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 1.5e-98 363.2 216 79.6
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 3.4e-98 362.1 229 76.9
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 4.5e-98 361.7 237 73.4
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 4.5e-98 361.7 229 76.9
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 2.2e-97 359.4 247 73.7
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 2.9e-97 359.0 229 76.4
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 2.9e-97 359.0 231 75.8
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 3.8e-97 358.6 230 76.1
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.4e-96 356.7 225 76.9
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 1.9e-96 356.3 232 74.1
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 3.2e-96 355.5 216 77.8
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 5.5e-96 354.8 218 78.9
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 5.5e-96 354.8 216 77.8
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 7.2e-96 354.4 217 78.8
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 9.3e-96 354.0 237 71.7
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 6.1e-95 351.3 230 75.2
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 7.9e-95 350.9 244 71.7
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 1.0e-94 350.5 234 73.1
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 1.0e-94 350.5 216 77.3
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.3e-94 350.1 234 72.6
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 1.8e-94 349.7 220 76.8
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 2.3e-94 349.4 222 76.6
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 2.3e-94 349.4 214 77.6
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 3.0e-94 349.0 232 74.6
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 3.0e-94 349.0 219 78.1
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 3.9e-94 348.6 228 74.1
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 5.1e-94 348.2 233 72.5
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 6.7e-94 347.8 231 73.2
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 6.7e-94 347.8 229 73.8
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 1.9e-93 346.3 211 79.1
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 5.7e-93 344.7 217 75.1
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 9.7e-93 344.0 224 75.0
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 9.7e-93 344.0 224 75.0
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 9.7e-93 344.0 224 75.0
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 9.7e-93 344.0 221 76.5
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 1.3e-92 343.6 224 74.6
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.6e-92 343.2 222 73.9
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.6e-92 343.2 231 72.3
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.2e-92 342.8 215 75.8
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 3.7e-92 342.0 218 77.1
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 4.8e-92 341.7 216 78.2
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 6.3e-92 341.3 217 74.2
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 8.2e-92 340.9 222 73.4
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.1e-91 340.5 222 74.8
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 1.4e-91 340.1 214 77.1
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.8e-91 339.7 220 75.9
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 1.8e-91 339.7 220 75.9
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 1.8e-91 339.7 214 75.7
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 2.4e-91 339.3 222 74.3
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 2.4e-91 339.3 222 73.4
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 2.4e-91 339.3 222 73.4
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 2.4e-91 339.3 222 73.4
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 2.4e-91 339.3 222 73.4
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 3.1e-91 339.0 229 73.8
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 5.3e-91 338.2 213 77.0
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 5.3e-91 338.2 228 71.9
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 5.3e-91 338.2 222 74.3
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 6.9e-91 337.8 222 73.0
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 9.1e-91 337.4 228 75.0
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 2.0e-90 336.3 216 76.4
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 4.5e-90 335.1 228 70.2
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 7.7e-90 334.3 228 70.6
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 1.3e-89 333.6 234 73.5
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 5.0e-89 331.6 224 69.6
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 8.5e-89 330.9 216 74.5
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.9e-88 329.7 215 74.9
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 4.2e-88 328.6 223 73.5
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 4.2e-88 328.6 223 73.5
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.5e-88 328.2 229 69.0
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.5e-88 328.2 213 74.2
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 1.2e-87 327.0 215 74.0
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 1.6e-87 326.6 223 73.1
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 2.1e-87 326.2 214 72.4
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 2.7e-87 325.9 219 71.7
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 6.1e-87 324.7 216 70.8
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 1.4e-86 323.6 223 71.7
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 1.4e-86 323.6 230 70.9
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 1.8e-86 323.2 228 70.6
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.8e-86 323.2 235 68.5
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 2.3e-86 322.8 223 72.2
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 5.1e-86 321.6 227 69.2
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 8.8e-86 320.9 223 71.7
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 2.0e-85 319.7 227 69.2
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 2.6e-85 319.3 227 69.2
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 2.2e-84 316.2 222 70.7
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 2.2e-84 316.2 225 70.7
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.8e-84 315.8 229 69.4
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 2.8e-84 315.8 222 68.0
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 3.7e-84 315.5 239 66.5
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 3.7e-84 315.5 239 66.5
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 6.3e-84 314.7 223 68.2
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 6.3e-84 314.7 221 68.3
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 6.3e-84 314.7 239 66.1
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 1.4e-83 313.5 211 71.6
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.4e-83 313.5 223 70.0
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 1.8e-83 313.2 188 80.3
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 2.4e-83 312.8 223 69.1
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.4e-83 312.8 217 71.9
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.4e-83 312.8 236 67.4
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.1e-83 312.4 220 69.5
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.2e-82 310.5 218 69.7
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 1.2e-82 310.5 223 69.5
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.2e-82 310.5 213 70.9
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 2.6e-82 309.3 216 69.4
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 2.6e-82 309.3 217 70.0
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 3.4e-82 308.9 214 69.6
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 5.9e-82 308.1 227 67.8
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 7.7e-82 307.8 216 68.5
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 7.7e-82 307.8 216 68.5
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 7.7e-82 307.8 227 68.7
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 1.0e-81 307.4 228 67.5
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 1.0e-81 307.4 216 68.5
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 1.0e-81 307.4 216 68.5
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 1.0e-81 307.4 216 68.5
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.7e-81 306.6 222 67.6
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.7e-81 306.6 229 66.8
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 5.0e-81 305.1 221 67.4
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 1.1e-80 303.9 231 64.1
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 1.4e-80 303.5 214 68.7
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 1.4e-80 303.5 221 67.4
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 1.4e-80 303.5 224 66.1
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 1.9e-80 303.1 208 69.2
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 1.5e-77 293.5 202 71.8
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 4.4e-77 292.0 235 63.8
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 5.7e-77 291.6 225 66.2
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 2.2e-76 289.7 188 75.0
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.2e-74 283.9 178 77.5
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.3e-73 280.4 227 63.4
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 3.8e-73 278.9 223 63.7
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 3.2e-72 275.8 286 56.6
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 1.7e-65 253.4 236 56.8
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 4.2e-64 248.8 216 59.7
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 8.0e-63 244.6 201 60.7
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 1.2e-61 240.7 231 54.5
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 4.4e-61 238.8 145 80.7
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 1.3e-60 237.3 145 80.0
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 1.8e-59 233.4 239 54.8
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 6.5e-57 224.9 206 55.8
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 2.3e-54 216.5 135 78.5
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 8.3e-52 208.0 215 52.6
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 1.4e-51 207.2 231 49.4
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 8.9e-46 188.0 213 46.5
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 1.1e-40 171.0 180 53.3
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 4.4e-37 159.1 106 72.6
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 5.8e-37 158.7 168 47.0
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 7.5e-29 131.7 86 74.4
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 9.5e-24 114.8 86 60.5
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 2.0e-13 80.5 61 60.7
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.1e-11 74.7 89 42.7
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 1.1e-08 64.7 81 48.1
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 4.3e-08 62.8 68 41.2
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 5.6e-08 62.4 40 72.5
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 9.6e-08 61.6 64 51.6
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 1.6e-07 60.8 44 65.9
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 2.8e-07 60.1 72 48.6


User provided reference genes

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