Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G085400 Prunus persica HOM05D007722 ORTHO05D009730 2.3e-72 275.4 135 100.0
MD17G1210100 Malus domestica HOM05D007722 ORTHO05D009730 3.0e-51 205.3 136 77.2
FAN09G0448 Fragaria x ananassa HOM05D007722 ORTHO05D009730 4.6e-36 154.8 114 70.2
FvH4_6g29860 Fragaria vesca HOM05D007722 ORTHO05D009730 1.3e-35 153.3 114 70.2
FAN14G1239 Fragaria x ananassa HOM05D007722 ORTHO05D009730 1.3e-35 153.3 114 70.2
Haze_16545 Corylus avellana HOM05D007722 ORTHO05D009730 1.9e-29 132.9 144 57.6
Cfa001975 Carpinus fangiana HOM05D007722 ORTHO05D009730 3.5e-28 128.6 121 61.2
Psat7g256360 Pisum sativum HOM05D007722 ORTHO05D009730 1.3e-22 110.2 129 54.3
CiPaw.01G246700 Carya illinoinensis HOM05D007722 ORTHO05D009730 2.9e-22 109.0 116 52.6
CANSAT56G0372 Cannabis sativa HOM05D007722 ORTHO05D009730 3.5e-20 102.1 128 48.4
Phvul.010G155500 Phaseolus vulgaris HOM05D007722 ORTHO05D009730 7.9e-20 100.9 70 68.6
TAR636G1020 Trochodendron aralioides HOM05D007722 ORTHO05D009730 3.9e-19 98.6 130 47.7
Eucgr.F03868 Eucalyptus grandis HOM05D007722 ORTHO05D009730 8.7e-19 97.4 134 50.7
COL.COLO4_12955 Corchorus olitorius HOM05D007722 ORTHO05D009730 3.3e-18 95.5 94 58.5
Glyma.07G030600 Glycine max HOM05D007722 ORTHO05D009730 5.6e-18 94.7 100 54.0
Eucgr.L02714 Eucalyptus grandis HOM05D007722 ORTHO05D009730 9.6e-18 94.0 129 51.2
Dinv30597 Davidia involucrata HOM05D007722 ORTHO05D009730 1.6e-17 93.2 142 45.1
Medtr4g010270 Medicago truncatula HOM05D007722 ORTHO05D009730 1.6e-17 93.2 54 77.8
VMungo0331G1522 Vigna mungo HOM05D007722 ORTHO05D009730 2.8e-17 92.4 98 55.1
MBI01_g35411_MAGBIO Magnolia biondii HOM05D007722 ORTHO05D009730 3.6e-17 92.0 118 49.2
Oeu045155.1 Olea europaea HOM05D007722 ORTHO05D009730 6.2e-17 91.3 78 60.3
GSVIVG01017323001 Vitis vinifera HOM05D007722 ORTHO05D009730 3.1e-16 89.0 123 47.2
QL05p029543 Quercus lobata HOM05D007722 ORTHO05D009730 5.3e-16 88.2 129 46.5
PGR102G2260 Punica granatum HOM05D007722 ORTHO05D009730 6.9e-16 87.8 137 47.4
Rhsim08G0213600 Rhododendron simsii HOM05D007722 ORTHO05D009730 6.9e-16 87.8 99 54.5
Glyma.08G212200 Glycine max HOM05D007722 ORTHO05D009730 9.0e-16 87.4 147 40.1
Lalb_Chr25g0279351 Lupinus albus HOM05D007722 ORTHO05D009730 9.0e-16 87.4 87 55.2
Duzib160G0092 Durio zibethinus HOM05D007722 ORTHO05D009730 1.2e-15 87.0 93 51.6
ClCG09G002890 Citrullus lanatus HOM05D007722 ORTHO05D009730 1.5e-15 86.7 116 47.4
Gohir.A10G073900 Gossypium hirsutum HOM05D007722 ORTHO05D009730 1.5e-15 86.7 91 56.0
Potri.001G192500 Populus trichocarpa HOM05D007722 ORTHO05D009730 1.5e-15 86.7 148 44.6
Gohir.D10G075700 Gossypium hirsutum HOM05D007722 ORTHO05D009730 2.6e-15 85.9 107 47.7
Nitab4.5_0011590g0030 Nicotiana tabacum HOM05D007722 ORTHO05D009730 3.4e-15 85.5 124 45.2
Migut.D01071 Erythranthe guttata HOM05D007722 ORTHO05D009730 5.8e-15 84.7 72 58.3
Lalb_Chr04g0262381 Lupinus albus HOM05D007722 ORTHO05D009730 5.8e-15 84.7 93 53.8
Nn2g12058 Nelumbo nucifera HOM05D007722 ORTHO05D009730 5.8e-15 84.7 136 44.1
Aqoxy7G03685 Aquilegia oxysepala HOM05D007722 ORTHO05D009730 9.9e-15 84.0 94 51.1
CSS0036618 Camellia sinensis var. sinensis HOM05D007722 ORTHO05D009730 9.9e-15 84.0 119 47.9
Thecc.06G022100 Theobroma cacao HOM05D007722 ORTHO05D009730 9.9e-15 84.0 93 49.5
Lj3g0002989 Lotus japonicus HOM05D007722 ORTHO05D009730 1.3e-14 83.6 46 82.6
SGA_v2.0_scaffold37G14773 Striga asiatica HOM05D007722 ORTHO05D009730 1.7e-14 83.2 73 57.5
Gorai.011G083600 Gossypium raimondii HOM05D007722 ORTHO05D009730 2.2e-14 82.8 107 45.8
PGSC0003DMG401000617 Solanum tuberosum HOM05D007722 ORTHO05D009730 1.4e-13 80.1 81 53.1
Sc10g0005890 Simmondsia chinensis HOM05D007722 ORTHO05D009730 1.9e-13 79.7 114 42.1
Nitab4.5_0007793g0010 Nicotiana tabacum HOM05D007722 ORTHO05D009730 3.2e-13 79.0 113 46.9
Sopen03g035570 Solanum pennellii HOM05D007722 ORTHO05D009730 3.2e-13 79.0 81 53.1
Solyc03g116660.3 Solanum lycopersicum HOM05D007722 ORTHO05D009730 5.5e-13 78.2 81 53.1
Gohir.A05G126200 Gossypium hirsutum HOM05D007722 ORTHO05D009730 1.2e-12 77.0 71 53.5
Gohir.D05G127100 Gossypium hirsutum HOM05D007722 ORTHO05D009730 1.2e-12 77.0 71 53.5
Gorai.009G131200 Gossypium raimondii HOM05D007722 ORTHO05D009730 1.2e-12 77.0 71 53.5
Sed0026756 Sechium edule HOM05D007722 ORTHO05D009730 1.2e-12 77.0 64 60.9
RcHm_v2.0_Chr2g0135741 Rosa chinensis HOM05D007722 ORTHO05D009730 3.5e-12 75.5 72 59.7
EL10Ac9g21908 Beta vulgaris HOM05D007722 ORTHO05D009730 1.8e-11 73.2 110 44.5
CDE06G0954 Ceratophyllum demersum HOM05D007722 ORTHO05D009730 2.3e-11 72.8 74 56.8
BraA01t03884Z Brassica rapa HOM05D007722 ORTHO05D009730 3.0e-11 72.4 85 47.1
Manes.11G056000 Manihot esculenta HOM05D007722 ORTHO05D009730 5.1e-11 71.6 113 43.4
CARHR090870 Cardamine hirsuta HOM05D007722 ORTHO05D009730 8.7e-11 70.9 114 41.2
Carub.0003s1552 Capsella rubella HOM05D007722 ORTHO05D009730 1.1e-10 70.5 108 42.6
unitig_0.g1117 Utricularia gibba HOM05D007722 ORTHO05D009730 1.5e-10 70.1 76 52.6
DCAR_025509 Daucus carota HOM05D007722 ORTHO05D009730 3.3e-10 68.9 60 51.7
THA.LOC104810506 Tarenaya hassleriana HOM05D007722 ORTHO05D009730 4.3e-10 68.6 111 41.4
ECA232G4504 Erigeron canadensis HOM05D000985 ORTHO05D000866 5.6e-10 68.2 72 51.4
Manes.04G113466 Manihot esculenta HOM05D007722 ORTHO05D009730 1.3e-09 67.0 100 46.0
Peaxi162Scf00332g00773 Petunia axillaris HOM05D007722 ORTHO05D009730 1.3e-09 67.0 76 51.3
HanXRQChr16g0500401 Helianthus annuus HOM05D007722 ORTHO05D009730 1.6e-09 66.6 50 64.0
THA.LOC104818136 Tarenaya hassleriana HOM05D007722 ORTHO05D009730 2.1e-09 66.2 104 42.3
CDE07G1717 Ceratophyllum demersum HOM05D007722 ORTHO05D009730 3.7e-09 65.5 74 51.4
HPP92_000666 Vanilla planifolia HOM05D007722 ORTHO05D009730 4.8e-09 65.1 71 49.3
Aa31LG8G2980 Aethionema arabicum HOM05D007722 ORTHO05D009730 1.8e-08 63.2 115 37.4
Os01g0392100 Oryza sativa ssp. japonica HOM05D007722 ORTHO05D009730 2.4e-08 62.8 132 36.4
BcaB04g20904 Brassica carinata HOM05D007722 ORTHO05D009730 4.0e-08 62.0 91 42.9
Sabra01G0149600 Salix brachista HOM05D007722 ORTHO05D009730 4.0e-08 62.0 69 50.7
Sp3g14100 Schrenkiella parvula HOM05D007722 ORTHO05D009730 1.2e-07 60.5 125 36.8
BcaC09g48556 Brassica carinata HOM05D007722 ORTHO05D009730 1.5e-07 60.1 89 42.7
Zm00001eb221290 Zea mays HOM05D007722 ORTHO05D009730 2.0e-07 59.7 103 43.7
A01p38330 Brassica napus HOM05D007722 ORTHO05D009730 2.6e-07 59.3 92 42.4
AL1G60800 Arabidopsis lyrata HOM05D007722 ORTHO05D009730 7.6e-07 57.8 99 42.4
CARHR042660 Cardamine hirsuta HOM05D007722 ORTHO05D009730 7.6e-07 57.8 108 38.9
Thhalv10021781m.g Eutrema salsugineum HOM05D007722 ORTHO05D009730 7.6e-07 57.8 98 40.8
PSO210G0183 Papaver somniferum HOM05D007722 ORTHO05D009730 1.7e-06 56.6 72 48.6
PSO210G5680 Papaver somniferum HOM05D007722 ORTHO05D009730 1.7e-06 56.6 67 49.3
Thhalv10011859m.g Eutrema salsugineum HOM05D007722 ORTHO05D009730 3.8e-06 55.5 96 39.6
Atru.chr1.2985 Acer truncatum HOM05D007722 ORTHO05D009730 4.9e-06 55.1 113 37.2
BcaC05g28932 Brassica carinata HOM05D000020 ORTHO05D000543 4.9e-06 55.1 53 47.2
C05p50590 Brassica napus HOM05D000020 ORTHO05D000543 4.9e-06 55.1 53 47.2
Carub.0001s4151 Capsella rubella HOM05D007722 ORTHO05D009730 8.4e-06 54.3 99 40.4


User provided reference genes

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