Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 2.9e-41 171.4 84 100.0
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 1.9e-32 142.1 74 95.9
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 3.0e-25 118.2 83 74.7
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 1.6e-23 112.5 72 80.6
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 3.1e-22 108.2 69 73.9
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 3.1e-22 108.2 77 71.4
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 3.1e-22 108.2 69 73.9
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 3.1e-22 108.2 77 71.4
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 9.9e-21 103.2 95 58.9
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 3.7e-20 101.3 74 70.3
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 4.9e-20 100.9 69 71.0
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 6.4e-20 100.5 78 66.7
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 1.1e-19 99.8 69 69.6
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 1.1e-19 99.8 70 67.1
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 1.1e-19 99.8 66 71.2
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 1.4e-19 99.4 70 67.1
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 1.4e-19 99.4 70 67.1
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 1.9e-19 99.0 65 67.7
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 1.9e-19 99.0 81 63.0
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 1.9e-19 99.0 71 71.8
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 1.9e-19 99.0 71 71.8
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 1.9e-19 99.0 95 54.7
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 2.4e-19 98.6 66 69.7
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 2.4e-19 98.6 70 67.1
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 2.4e-19 98.6 66 69.7
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 3.2e-19 98.2 69 66.7
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 3.2e-19 98.2 68 69.1
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 3.2e-19 98.2 71 63.4
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 4.1e-19 97.8 70 65.7
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 5.4e-19 97.4 66 68.2
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 5.4e-19 97.4 66 68.2
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 5.4e-19 97.4 66 68.2
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 5.4e-19 97.4 65 70.8
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 5.4e-19 97.4 66 68.2
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 5.4e-19 97.4 74 67.6
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 9.2e-19 96.7 69 66.7
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 9.2e-19 96.7 93 59.1
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 1.2e-18 96.3 62 75.8
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 1.2e-18 96.3 69 63.8
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 1.2e-18 96.3 60 71.7
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 1.2e-18 96.3 70 65.7
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 1.6e-18 95.9 69 66.7
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 2.1e-18 95.5 66 68.2
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 2.1e-18 95.5 70 65.7
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 2.1e-18 95.5 76 65.8
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 2.1e-18 95.5 76 65.8
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 2.7e-18 95.1 90 57.8
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 3.5e-18 94.7 67 68.7
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 3.5e-18 94.7 71 67.6
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 4.6e-18 94.4 61 73.8
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 6.0e-18 94.0 56 78.6
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 7.8e-18 93.6 74 63.5
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 7.8e-18 93.6 56 76.8
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 7.8e-18 93.6 76 64.5
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 1.0e-17 93.2 70 65.7
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 1.3e-17 92.8 79 65.8
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 1.7e-17 92.4 53 81.1
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 2.3e-17 92.0 62 71.0
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 2.3e-17 92.0 59 72.9
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 3.0e-17 91.7 66 65.2
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 3.0e-17 91.7 79 64.6
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 3.0e-17 91.7 67 64.2
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 3.0e-17 91.7 69 63.8
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 3.9e-17 91.3 67 70.1
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 5.1e-17 90.9 64 65.6
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 8.6e-17 90.1 66 68.2
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 1.1e-16 89.7 57 73.7
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 1.5e-16 89.4 72 62.5
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 1.5e-16 89.4 54 77.8
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 1.9e-16 89.0 80 60.0
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 1.9e-16 89.0 56 71.4
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 2.5e-16 88.6 80 55.0
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 4.3e-16 87.8 73 65.8
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 4.3e-16 87.8 71 60.6
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 5.6e-16 87.4 42 97.6
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 1.2e-15 86.3 68 61.8
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 1.2e-15 86.3 68 61.8
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 1.2e-15 86.3 52 76.9
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 1.6e-15 85.9 61 67.2
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 1.6e-15 85.9 52 75.0
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 2.1e-15 85.5 64 60.9
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 2.8e-15 85.1 82 56.1
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 1.1e-14 83.2 56 69.6
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 2.4e-14 82.0 68 55.9
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 3.1e-14 81.6 82 54.9
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 4.0e-14 81.3 72 56.9
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 4.0e-14 81.3 72 56.9
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 4.0e-14 81.3 72 56.9
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 5.2e-14 80.9 70 57.1
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 5.2e-14 80.9 64 62.5
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 5.2e-14 80.9 62 62.9
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 6.8e-14 80.5 73 60.3
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 6.8e-14 80.5 83 50.6
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 8.9e-14 80.1 70 57.1
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 1.5e-13 79.3 65 61.5
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 2.0e-13 79.0 72 56.9
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 2.6e-13 78.6 68 60.3
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 2.6e-13 78.6 67 61.2
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 7.6e-13 77.0 64 57.8
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 1.4e-11 72.8 61 63.9
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 1.4e-11 72.8 61 63.9
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 4.1e-11 71.2 60 61.7
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 5.4e-11 70.9 68 58.8
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 5.4e-11 70.9 60 61.7
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 7.8e-10 67.0 54 64.8
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 1.7e-09 65.9 69 50.7
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 6.6e-09 63.9 48 68.8
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 9.6e-08 60.1 44 61.4
A03p08530 Brassica napus HOM05D006906 ORTHO05D008578 1.6e-07 59.3 66 48.5
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 4.0e-06 54.7 66 50.0


User provided reference genes

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