Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 0.0e+00 1419.1 731 100.0
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 0.0e+00 1180.2 751 82.4
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 0.0e+00 1136.3 734 79.7
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 0.0e+00 1103.6 733 78.2
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 0.0e+00 1103.6 734 77.7
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 0.0e+00 1097.8 732 77.6
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 0.0e+00 1086.6 732 76.4
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.3e-310 1069.3 704 78.7
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.6e-276 956.1 740 67.2
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 6.3e-273 944.1 740 68.9
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 5.0e-270 934.5 742 68.1
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 4.2e-269 931.4 735 68.7
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 9.4e-269 930.2 733 67.1
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 2.1e-268 929.1 797 64.7
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 8.0e-268 927.2 746 67.2
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 9.1e-264 913.7 747 65.6
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 1.6e-260 902.9 751 65.8
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.0e-259 898.7 735 65.4
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 3.4e-258 895.2 740 65.5
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 1.1e-256 890.2 740 65.8
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.2e-255 886.7 713 67.2
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.6e-255 886.3 716 65.5
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 7.2e-253 877.5 772 62.4
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 2.8e-252 875.5 751 64.0
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.8e-251 872.8 772 62.2
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 5.2e-251 871.3 736 65.5
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 2.6e-250 869.0 751 65.2
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 8.3e-249 864.0 806 60.8
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 4.1e-248 861.7 780 62.1
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.6e-247 859.8 780 62.1
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 4.3e-245 851.7 738 62.3
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.2e-242 843.6 771 60.2
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 2.0e-242 842.8 743 62.6
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 4.4e-242 841.6 752 62.1
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 9.8e-242 840.5 737 62.0
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 7.8e-239 830.9 751 62.6
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.7e-238 829.7 739 62.2
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.1e-235 820.5 813 56.8
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 2.3e-235 819.3 856 57.5
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 3.1e-235 818.9 737 61.2
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 5.8e-234 814.7 856 57.4
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 8.3e-233 810.8 742 59.7
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.1e-232 810.4 746 60.3
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 4.1e-232 808.5 762 60.4
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.6e-231 806.6 743 59.9
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 1.3e-230 803.5 827 56.1
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 3.9e-230 802.0 614 68.6
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 1.1e-229 800.4 812 57.3
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 1.9e-229 799.7 825 55.8
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 4.3e-229 798.5 826 55.7
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.2e-228 797.0 825 55.6
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 4.7e-228 795.0 815 57.4
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.4e-227 793.5 750 59.9
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 3.7e-225 785.4 740 58.5
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 8.4e-225 784.3 829 56.1
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 4.1e-224 781.9 814 55.7
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 7.1e-224 781.2 740 60.1
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 6.0e-223 778.1 781 57.9
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 1.7e-222 776.5 779 57.8
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.0e-222 775.8 818 55.3
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.5e-221 773.5 844 53.6
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.6e-220 770.0 754 58.6
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 3.6e-220 768.8 752 57.4
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 4.7e-220 768.5 771 57.7
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 6.8e-219 764.6 789 54.9
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 8.4e-217 757.7 790 56.5
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.1e-216 757.3 638 64.6
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.9e-216 756.5 722 59.7
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 4.2e-216 755.4 688 61.8
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.7e-215 752.7 744 57.4
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 1.3e-214 750.4 743 56.9
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 1.3e-214 750.4 826 53.4
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 2.3e-214 749.6 738 56.9
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 3.9e-214 748.8 704 58.9
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 6.6e-214 748.0 796 53.8
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.1e-213 747.3 741 56.8
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.5e-213 746.9 739 57.2
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 2.5e-213 746.1 739 56.7
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 4.3e-213 745.3 747 56.6
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 2.1e-212 743.0 737 57.5
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 3.6e-212 742.3 743 56.4
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 4.0e-211 738.8 748 55.9
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 1.2e-210 737.3 739 55.9
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 1.5e-210 736.9 740 57.3
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 5.8e-210 734.9 722 58.2
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 9.9e-210 734.2 739 55.9
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.7e-209 733.4 735 56.2
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.4e-208 730.3 749 55.3
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 2.4e-208 729.6 813 52.8
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-207 727.2 740 55.5
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 6.6e-206 721.5 737 55.5
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.1e-205 720.7 735 55.8
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.9e-205 719.9 738 56.4
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 9.6e-205 717.6 629 63.1
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 2.1e-204 716.5 737 55.5
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.1e-204 716.5 846 52.1
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 4.0e-203 712.2 740 54.9
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 2.0e-202 709.9 738 55.3
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 1.7e-201 706.8 740 54.9
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 2.2e-201 706.4 738 54.9
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 5.5e-200 701.8 724 54.3
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 7.9e-199 698.0 741 53.7
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.3e-198 697.2 820 50.4
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 5.1e-198 695.3 785 51.6
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 9.6e-197 691.0 618 60.5
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 8.1e-196 688.0 738 53.8
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 4.9e-193 678.7 718 56.3
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 6.5e-185 651.7 711 53.6
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.7e-177 627.1 633 55.1
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.6e-175 620.5 718 53.2
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 2.6e-173 613.2 840 46.4
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 6.3e-172 608.6 635 52.6
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 2.0e-170 603.6 844 45.6
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.3e-169 600.9 445 67.9
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 4.8e-164 582.4 835 45.0
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.7e-159 566.6 718 48.7
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 1.4e-158 564.3 758 46.4
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 8.8e-150 535.0 764 44.4
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.9e-144 517.3 442 60.4
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 5.2e-134 482.6 463 56.4
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 7.1e-115 419.1 773 37.6
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.4e-108 395.6 762 38.8
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.1e-102 377.1 501 44.1
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.4e-91 339.7 299 59.2
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 3.5e-90 337.0 471 42.5
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.8e-87 326.6 481 40.5
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.2e-87 326.2 518 46.3
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.0e-86 323.6 481 40.7
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.3e-86 323.2 486 40.1
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 6.0e-82 309.7 519 39.5
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.8e-79 300.8 430 40.2
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-77 295.4 483 37.1
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-77 295.4 483 37.1
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.0e-77 294.7 468 39.3
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.9e-76 290.0 556 36.0
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 9.0e-70 269.2 605 38.2
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 2.2e-68 264.6 384 44.8
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 3.4e-53 214.2 190 51.6
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.4e-46 192.2 398 40.5
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 6.5e-44 183.3 203 52.7
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 4.8e-31 140.6 92 66.3
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.7e-29 134.8 428 32.7
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 2.9e-20 104.8 71 73.2
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.2e-18 99.4 81 58.0
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 4.9e-15 87.4 63 60.3
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.9e-15 87.4 53 69.8
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.4e-14 85.9 53 67.9
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.4e-14 85.9 53 67.9
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.6e-13 82.4 77 49.4
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 3.9e-12 77.8 53 60.4
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.5e-11 75.1 333 30.3
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.1e-09 69.7 76 56.6
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.2e-08 66.2 49 67.3
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 2.2e-07 62.0 152 32.2


User provided reference genes

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