Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 1.8e-273 945.3 458 100.0
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 3.6e-226 788.1 461 84.4
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 8.9e-225 783.5 462 82.0
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.3e-223 779.6 458 83.6
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.3e-220 768.8 458 82.8
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 6.6e-220 767.3 460 82.4
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.9e-219 765.8 470 81.5
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 7.9e-205 717.2 389 87.7
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 1.3e-204 716.5 482 74.9
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 2.5e-203 712.2 458 77.9
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 1.2e-197 693.3 455 75.8
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 8.1e-194 680.6 389 82.3
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 7.6e-192 674.1 463 71.9
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 7.6e-192 674.1 465 71.8
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 2.9e-191 672.2 461 72.7
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 6.5e-191 671.0 432 77.1
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.5e-190 669.1 467 71.9
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 4.2e-190 668.3 462 72.1
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 9.3e-190 667.2 456 74.1
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 1.2e-189 666.8 464 72.6
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.1e-187 660.2 465 70.8
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 4.3e-187 658.3 384 81.2
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 7.4e-187 657.5 457 73.3
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 2.1e-186 656.0 454 72.7
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 2.1e-186 656.0 387 79.1
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 4.8e-186 654.8 463 70.8
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 1.4e-185 653.3 404 77.2
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 1.4e-185 653.3 462 70.8
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 6.9e-185 651.0 459 71.2
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 9.0e-185 650.6 465 72.5
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 1.0e-183 647.1 452 72.6
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.0e-183 647.1 457 71.8
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.0e-183 647.1 456 69.7
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.3e-183 646.7 456 71.7
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.8e-183 645.2 456 71.7
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 6.5e-183 644.4 431 71.7
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 8.5e-183 644.0 409 74.8
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 8.5e-183 644.0 465 69.0
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 1.4e-182 643.3 456 69.5
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 3.2e-182 642.1 465 71.2
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 4.2e-182 641.7 363 81.8
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 4.2e-182 641.7 466 68.7
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.2e-181 640.2 457 69.8
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 3.6e-181 638.6 461 69.4
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 6.1e-181 637.9 454 68.7
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 7.9e-181 637.5 454 70.9
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 7.9e-181 637.5 426 73.0
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 1.0e-180 637.1 445 70.3
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 3.9e-180 635.2 459 69.1
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 5.1e-180 634.8 383 78.1
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 8.7e-180 634.0 458 70.1
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 8.7e-180 634.0 459 67.3
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.3e-179 631.7 427 72.1
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 5.7e-179 631.3 461 67.5
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 5.7e-179 631.3 473 67.7
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 9.7e-179 630.6 365 81.6
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 1.6e-178 629.8 377 77.7
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 2.8e-178 629.0 392 76.0
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 6.3e-178 627.9 390 78.2
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 6.3e-178 627.9 404 75.5
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 3.1e-177 625.5 447 68.2
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 1.2e-176 623.6 457 67.4
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.2e-176 623.6 480 66.0
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 1.5e-176 623.2 465 67.3
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 2.0e-176 622.9 396 75.0
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 2.0e-176 622.9 459 68.0
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 2.0e-176 622.9 459 68.0
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 4.5e-176 621.7 430 71.2
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 2.9e-175 619.0 460 68.3
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 3.8e-175 618.6 451 67.4
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 8.5e-175 617.5 395 74.4
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 8.5e-175 617.5 395 73.4
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 3.2e-174 615.5 409 71.6
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 4.2e-174 615.1 348 81.9
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.2e-173 613.6 434 69.8
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 1.6e-173 613.2 460 65.0
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 2.1e-173 612.8 435 68.5
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 3.0e-172 609.0 460 66.7
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 1.1e-171 607.1 434 68.7
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 1.1e-171 607.1 462 64.5
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 4.4e-171 605.1 415 71.1
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 5.7e-171 604.7 425 69.6
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 3.7e-170 602.1 402 72.4
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 4.8e-170 601.7 408 71.1
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 4.8e-170 601.7 397 72.5
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 4.8e-170 601.7 397 72.3
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 4.8e-170 601.7 408 71.1
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 1.1e-169 600.5 428 68.9
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 3.1e-169 599.0 425 68.5
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 6.9e-169 597.8 381 73.8
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 1.2e-168 597.0 421 69.1
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 2.0e-168 596.3 378 74.6
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 2.0e-168 596.3 425 68.0
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 2.6e-168 595.9 421 69.4
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 4.5e-168 595.1 482 63.5
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 5.9e-168 594.7 458 65.5
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 7.7e-168 594.3 434 66.8
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 1.0e-167 594.0 421 68.9
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 1.3e-167 593.6 461 64.2
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 2.2e-167 592.8 461 64.2
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 3.8e-167 592.0 421 68.2
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 4.2e-166 588.6 397 70.8
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 3.9e-164 582.0 375 73.1
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 5.2e-164 581.6 421 68.2
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 1.1e-163 580.5 452 64.6
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 1.5e-163 580.1 422 68.7
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 2.0e-163 579.7 349 79.1
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 1.7e-162 576.6 430 65.8
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 2.8e-162 575.9 408 69.9
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 3.7e-162 575.5 435 65.5
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.9e-159 565.8 350 76.3
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 1.9e-158 563.1 369 72.1
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 3.2e-158 562.4 363 74.7
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 1.2e-157 560.5 344 74.1
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.7e-157 558.5 318 83.0
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 2.1e-149 533.1 340 71.2
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 8.8e-148 527.7 370 65.7
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 9.8e-147 524.2 337 71.2
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.4e-140 503.8 351 68.1
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 4.9e-138 495.4 328 72.0
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 7.8e-136 488.0 404 60.9
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 5.2e-132 475.3 343 67.6
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 2.6e-131 473.0 315 70.5
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 7.0e-129 464.9 343 65.3
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 5.6e-126 455.3 330 61.8
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 3.1e-124 449.5 273 78.0
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 1.6e-120 437.2 337 60.2
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 3.5e-120 436.0 311 67.2
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 6.2e-117 425.2 334 59.0
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 1.2e-115 421.0 336 57.1
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 2.0e-115 420.2 247 80.6
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 2.9e-114 416.4 331 57.7
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 3.4e-107 392.9 337 52.8
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 2.9e-98 363.2 283 64.7
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 6.9e-92 342.0 274 64.6
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 1.8e-87 327.4 330 46.7
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 8.4e-82 308.5 347 44.4
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 1.8e-76 290.8 326 46.0
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 1.5e-67 261.2 145 85.5
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 4.8e-61 239.6 251 54.6
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 4.5e-59 233.0 177 65.5
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 8.8e-39 165.6 164 45.7
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 2.0e-38 164.5 164 45.7
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.3e-37 161.8 241 41.1
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.4e-36 158.3 283 37.1
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 5.0e-34 149.8 81 84.0
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 4.7e-32 143.3 95 75.8
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 3.5e-27 127.1 129 48.8
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-22 111.7 104 55.8
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 2.1e-16 91.3 82 51.2
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 8.0e-08 62.8 52 48.1
Nn3g18662 Nelumbo nucifera HOM05D004738 ORTHO05D273315 7.5e-06 56.2 46 52.2


User provided reference genes

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