Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 2.2e-66 255.4 118 100.0
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 1.9e-30 136.0 119 57.1
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 2.6e-27 125.6 114 56.1
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 1.1e-25 120.2 118 52.5
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 3.2e-25 118.6 118 51.7
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 5.1e-23 111.3 113 49.6
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 3.3e-22 108.6 109 49.5
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 2.1e-21 105.9 116 44.8
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 2.8e-21 105.5 109 45.9
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 2.8e-21 105.5 109 45.9
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 6.2e-21 104.4 109 45.0
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 6.2e-21 104.4 109 46.8
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 1.1e-20 103.6 115 49.6
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 2.4e-20 102.4 115 47.8
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.4e-20 102.4 106 48.1
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 2.4e-20 102.4 113 49.6
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 3.1e-20 102.1 122 43.4
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 3.1e-20 102.1 110 42.7
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 4.0e-20 101.7 111 49.5
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 6.9e-20 100.9 114 45.6
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 9.0e-20 100.5 117 40.2
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 9.0e-20 100.5 106 49.1
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 9.0e-20 100.5 110 46.4
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 2.0e-19 99.4 119 47.1
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 2.6e-19 99.0 115 44.3
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.4e-19 98.6 115 44.3
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 3.4e-19 98.6 116 44.8
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 7.6e-19 97.4 116 44.8
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 9.9e-19 97.1 116 48.3
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 1.7e-18 96.3 114 45.6
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 1.7e-18 96.3 134 39.6
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 2.9e-18 95.5 86 48.8
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 2.9e-18 95.5 110 44.5
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 6.4e-18 94.4 108 47.2
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 1.1e-17 93.6 114 43.9
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 1.1e-17 93.6 120 43.3
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 1.4e-17 93.2 135 38.5
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 1.4e-17 93.2 123 43.9
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 1.9e-17 92.8 129 41.1
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 1.9e-17 92.8 120 42.5
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 1.9e-17 92.8 120 43.3
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 5.4e-17 91.3 105 47.6
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 5.4e-17 91.3 102 49.0
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 5.4e-17 91.3 120 42.5
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 7.1e-17 90.9 92 46.7
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 6.0e-16 87.8 114 43.9
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 1.0e-15 87.0 111 44.1
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.3e-15 86.7 100 47.0
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 1.8e-15 86.3 104 46.2
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.8e-15 86.3 100 47.0
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 3.0e-15 85.5 116 40.5
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 3.0e-15 85.5 116 40.5
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 3.0e-15 85.5 116 40.5
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 5.1e-15 84.7 104 43.3
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 6.7e-15 84.3 104 42.3
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 8.7e-15 84.0 124 37.9
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 2.5e-14 82.4 114 43.9
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 2.5e-14 82.4 123 39.8
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 3.3e-14 82.0 106 41.5
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 4.3e-14 81.6 123 38.2
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.3e-14 81.6 108 38.9
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 7.4e-14 80.9 113 37.2
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 7.4e-14 80.9 107 39.3
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 2.1e-13 79.3 110 40.9
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 4.8e-13 78.2 112 35.7
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 6.2e-13 77.8 112 40.2
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 8.1e-13 77.4 111 39.6
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 8.1e-13 77.4 109 43.1
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 1.1e-12 77.0 108 36.1
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.8e-12 76.3 108 38.9
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 2.4e-12 75.9 124 36.3
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 3.1e-12 75.5 111 36.0
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 3.1e-12 75.5 113 38.9
Ciclev10027058m.g Citrus clementina HOM05D005672 ORTHO05D003038 4.0e-12 75.1 86 47.7
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 5.3e-12 74.7 114 38.6
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 6.9e-12 74.3 111 40.5
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 9.0e-12 73.9 115 35.7
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 9.0e-12 73.9 115 35.7
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 9.0e-12 73.9 115 35.7
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 9.0e-12 73.9 109 39.4
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 9.0e-12 73.9 117 37.6
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 1.5e-11 73.2 112 37.5
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 1.5e-11 73.2 116 35.3
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 1.5e-11 73.2 116 33.6
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-11 73.2 116 35.3
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 1.5e-11 73.2 116 35.3
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 1.5e-11 73.2 116 35.3
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 2.0e-11 72.8 116 33.6
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-11 72.8 116 33.6
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.0e-11 72.8 110 42.7
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 2.0e-11 72.8 120 35.8
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 2.0e-11 72.8 108 36.1
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 3.4e-11 72.0 66 56.1
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 3.4e-11 72.0 123 33.3
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 4.5e-11 71.6 117 33.3
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 4.5e-11 71.6 84 44.0
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 4.5e-11 71.6 115 33.9
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 7.6e-11 70.9 97 40.2
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 7.6e-11 70.9 109 39.4
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 7.6e-11 70.9 102 39.2
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 7.6e-11 70.9 107 35.5
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 9.9e-11 70.5 114 36.8
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 9.9e-11 70.5 113 34.5
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 1.7e-10 69.7 116 31.9
Peaxi162Scf00207g00940 Petunia axillaris HOM05D005672 ORTHO05D003038 1.7e-10 69.7 120 37.5
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.7e-10 69.7 127 35.4
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 2.2e-10 69.3 91 40.7
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.2e-10 69.3 110 35.5
CiPaw.02G152000 Carya illinoinensis HOM05D005672 ORTHO05D003038 2.9e-10 68.9 115 36.5
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 3.8e-10 68.6 62 51.6
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.8e-10 68.6 108 35.2
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 3.8e-10 68.6 87 43.7
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 4.9e-10 68.2 116 32.8
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 4.9e-10 68.2 116 32.8
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 4.9e-10 68.2 117 35.0
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 4.9e-10 68.2 113 35.4
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 4.9e-10 68.2 124 30.6
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 8.4e-10 67.4 122 37.7
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-09 67.0 130 32.3
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 1.1e-09 67.0 117 33.3
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 1.9e-09 66.2 93 39.8
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 2.4e-09 65.9 120 35.8
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 3.2e-09 65.5 129 33.3
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.2e-09 65.5 116 31.9
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 5.5e-09 64.7 129 31.0
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 7.1e-09 64.3 130 31.5
Sed0007263 Sechium edule HOM05D005672 ORTHO05D003038 7.1e-09 64.3 89 43.8
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 1.2e-08 63.5 126 32.5
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.2e-08 63.5 110 33.6
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-08 63.2 127 34.6
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 1.6e-08 63.2 127 34.6
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 2.1e-08 62.8 108 35.2
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 2.7e-08 62.4 94 37.2
Sed0015260 Sechium edule HOM05D005672 ORTHO05D003038 2.7e-08 62.4 113 33.6
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.6e-08 61.6 64 45.3
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 7.9e-08 60.8 127 33.9
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 7.9e-08 60.8 116 35.3
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 1.3e-07 60.1 135 33.3
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 1.8e-07 59.7 107 30.8
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 1.8e-07 59.7 119 30.3
Potri.003G056450 Populus trichocarpa HOM05D005672 ORTHO05D003038 1.8e-07 59.7 95 42.1
Atru.chr1.3239 Acer truncatum HOM05D005672 ORTHO05D003038 2.3e-07 59.3 113 33.6
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.3e-07 59.3 67 41.8
Prupe.3G073100 Prunus persica HOM05D005672 ORTHO05D003038 3.0e-07 58.9 117 35.9
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 3.9e-07 58.5 102 30.4
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 5.1e-07 58.2 102 31.4
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 6.7e-07 57.8 128 32.8
MELO3C030573.2 Cucumis melo HOM05D005672 ORTHO05D003038 8.7e-07 57.4 106 34.9
PSO729G0079 Papaver somniferum HOM05D033620 ORTHO05D003038 8.7e-07 57.4 98 34.7
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 1.1e-06 57.0 127 33.1
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 1.9e-06 56.2 102 29.4
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.9e-06 56.2 117 32.5
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.9e-06 56.2 117 29.9
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 2.5e-06 55.8 102 29.4
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 3.3e-06 55.5 111 36.0
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 3.3e-06 55.5 111 36.0
Migut.I00852 Erythranthe guttata HOM05D005672 ORTHO05D003038 4.3e-06 55.1 82 35.4
Ciclev10026837m.g Citrus clementina HOM05D005672 ORTHO05D003038 5.6e-06 54.7 67 43.3
COL.COLO4_26662 Corchorus olitorius HOM05D005672 ORTHO05D003038 5.6e-06 54.7 96 39.6
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 5.6e-06 54.7 103 32.0
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 5.6e-06 54.7 111 36.9
Oeu019543.1 Olea europaea HOM05D005672 ORTHO05D003038 7.4e-06 54.3 98 36.7


User provided reference genes

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