Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G073100 Prunus persica HOM05D005672 ORTHO05D003038 7.8e-51 203.8 122 100.0
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 7.3e-25 117.5 119 47.1
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 3.1e-23 112.1 122 50.8
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 5.8e-22 107.8 107 48.6
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 9.3e-12 73.9 121 38.8
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 2.1e-11 72.8 113 40.7
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 2.3e-10 69.3 113 35.4
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 5.1e-10 68.2 112 41.1
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 5.1e-10 68.2 122 36.1
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-09 67.0 116 34.5
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-09 67.0 116 34.5
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.1e-09 67.0 116 36.2
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.1e-09 67.0 116 36.2
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 1.1e-09 67.0 113 38.9
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 2.5e-09 65.9 114 35.1
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 3.3e-09 65.5 116 33.6
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 4.3e-09 65.1 114 35.1
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 5.6e-09 64.7 41 63.4
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 7.4e-09 64.3 54 55.6
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.3e-08 63.5 52 57.7
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 1.6e-08 63.2 117 44.4
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 3.7e-08 62.0 110 34.5
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 4.8e-08 61.6 45 53.3
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 6.2e-08 61.2 119 49.6
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 2.4e-07 59.3 41 58.5
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 2.4e-07 59.3 121 31.4
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 2.4e-07 59.3 103 33.0
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 2.4e-07 59.3 117 35.9
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.4e-07 59.3 52 53.8
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 2.4e-07 59.3 57 47.4
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 3.1e-07 58.9 42 61.9
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.1e-07 58.9 49 53.1
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 4.0e-07 58.5 41 58.5
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 4.0e-07 58.5 48 52.1
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 4.0e-07 58.5 103 34.0
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 4.0e-07 58.5 110 34.5
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 4.0e-07 58.5 112 30.4
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 5.3e-07 58.2 42 61.9
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 5.3e-07 58.2 56 42.9
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 5.3e-07 58.2 103 34.0
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 6.9e-07 57.8 44 59.1
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 6.9e-07 57.8 121 32.2
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.2e-06 57.0 41 58.5
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.5e-06 56.6 112 31.2
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.5e-06 56.6 42 54.8
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 1.5e-06 56.6 105 33.3
Duzib235G1402 Durio zibethinus HOM05D005672 ORTHO05D003038 1.5e-06 56.6 51 45.1
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 1.5e-06 56.6 119 40.3
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 1.5e-06 56.6 119 40.3
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 2.0e-06 56.2 111 30.6
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.0e-06 56.2 51 49.0
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.0e-06 56.2 42 52.4
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.6e-06 55.8 42 50.0
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.6e-06 55.8 41 53.7
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 2.6e-06 55.8 46 50.0
RcHm_v2.0_Chr7g0236281 Rosa chinensis HOM05D005672 ORTHO05D003038 2.6e-06 55.8 103 34.0
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 3.4e-06 55.5 42 54.8
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 3.4e-06 55.5 42 52.4
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 3.4e-06 55.5 42 52.4
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 3.4e-06 55.5 51 47.1
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 5.8e-06 54.7 41 51.2
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 5.8e-06 54.7 41 56.1
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 5.8e-06 54.7 41 56.1
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 5.8e-06 54.7 42 57.1
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 5.8e-06 54.7 42 57.1
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 5.8e-06 54.7 116 31.9
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 5.8e-06 54.7 124 29.8
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 7.6e-06 54.3 41 51.2
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 7.6e-06 54.3 41 51.2
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 7.6e-06 54.3 44 54.5
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 7.6e-06 54.3 44 54.5
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 7.6e-06 54.3 112 28.6
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 7.6e-06 54.3 48 54.2


User provided reference genes

Program Settings