Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 8.3e-69 263.5 122 100.0
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 3.5e-35 151.8 117 61.5
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 3.3e-25 118.6 115 51.3
Prupe.3G073100 Prunus persica HOM05D005672 ORTHO05D003038 3.4e-22 108.6 107 48.6
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 4.3e-17 91.7 117 38.5
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 4.3e-17 91.7 116 46.6
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 5.6e-17 91.3 101 43.6
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 1.3e-16 90.1 114 48.2
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 6.2e-16 87.8 116 44.8
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 1.1e-15 87.0 102 46.1
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 1.1e-15 87.0 114 41.2
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 1.1e-15 87.0 109 39.4
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 4.0e-15 85.1 113 40.7
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 6.9e-15 84.3 114 39.5
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 6.9e-15 84.3 113 40.7
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 1.2e-14 83.6 112 39.3
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 2.0e-14 82.8 114 38.6
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 2.0e-14 82.8 114 38.6
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 2.6e-14 82.4 115 39.1
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 2.6e-14 82.4 114 38.6
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 3.4e-14 82.0 113 39.8
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 5.8e-14 81.3 105 41.9
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 9.9e-14 80.5 114 34.2
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.3e-13 80.1 110 40.0
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.7e-13 79.7 110 40.0
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.2e-13 79.3 113 39.8
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 2.9e-13 79.0 112 39.3
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 6.4e-13 77.8 114 41.2
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 8.4e-13 77.4 120 37.5
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 1.4e-12 76.6 112 36.6
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 2.4e-12 75.9 117 35.0
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 3.2e-12 75.5 115 40.0
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 5.4e-12 74.7 110 40.9
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 5.4e-12 74.7 109 39.4
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 5.4e-12 74.7 118 40.7
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 5.4e-12 74.7 120 35.8
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 9.3e-12 73.9 118 31.4
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 9.3e-12 73.9 115 32.2
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.2e-11 73.6 115 32.2
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 1.2e-11 73.6 113 38.1
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 1.2e-11 73.6 113 38.1
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 1.2e-11 73.6 113 38.1
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 1.2e-11 73.6 105 36.2
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.6e-11 73.2 116 34.5
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 1.6e-11 73.2 118 36.4
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 2.7e-11 72.4 110 40.0
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.7e-11 72.4 117 35.0
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 3.5e-11 72.0 119 35.3
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 4.6e-11 71.6 105 37.1
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 6.0e-11 71.2 110 37.3
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 6.0e-11 71.2 112 33.0
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 6.0e-11 71.2 105 33.3
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 7.9e-11 70.9 90 36.7
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 7.9e-11 70.9 124 29.0
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 1.0e-10 70.5 113 36.3
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 1.0e-10 70.5 119 35.3
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 1.0e-10 70.5 125 33.6
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 1.0e-10 70.5 112 34.8
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 1.3e-10 70.1 118 33.9
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.3e-10 70.1 112 34.8
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 3.0e-10 68.9 118 33.1
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 3.0e-10 68.9 129 31.8
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 3.0e-10 68.9 108 33.3
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 3.9e-10 68.6 117 35.9
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 3.9e-10 68.6 64 46.9
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 3.9e-10 68.6 114 32.5
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 5.1e-10 68.2 118 33.1
MELO3C023360.2 Cucumis melo HOM05D005672 ORTHO05D003038 5.1e-10 68.2 125 33.6
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 5.1e-10 68.2 111 36.9
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 5.1e-10 68.2 114 32.5
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 6.7e-10 67.8 112 34.8
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 6.7e-10 67.8 117 31.6
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 6.7e-10 67.8 112 34.8
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 6.7e-10 67.8 112 34.8
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 6.7e-10 67.8 112 34.8
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 8.7e-10 67.4 132 31.8
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 8.7e-10 67.4 114 36.0
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.1e-09 67.0 107 35.5
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.1e-09 67.0 102 36.3
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 1.1e-09 67.0 130 30.8
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 1.1e-09 67.0 117 31.6
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 1.1e-09 67.0 66 45.5
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 1.5e-09 66.6 101 35.6
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-09 66.6 118 32.2
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 1.9e-09 66.2 113 32.7
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.9e-09 66.2 83 38.6
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 3.3e-09 65.5 112 34.8
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 4.3e-09 65.1 115 33.9
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 7.4e-09 64.3 97 38.1
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 7.4e-09 64.3 112 34.8
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 7.4e-09 64.3 112 34.8
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 7.4e-09 64.3 127 29.9
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 7.4e-09 64.3 130 33.1
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 9.6e-09 63.9 115 32.2
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 9.6e-09 63.9 115 32.2
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 9.6e-09 63.9 115 32.2
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 1.3e-08 63.5 116 31.0
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 1.3e-08 63.5 52 53.8
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.3e-08 63.5 58 48.3
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.3e-08 63.5 109 37.6
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.6e-08 63.2 108 32.4
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 2.1e-08 62.8 111 35.1
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 2.1e-08 62.8 111 35.1
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 2.8e-08 62.4 118 32.2
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 2.8e-08 62.4 113 31.9
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 3.7e-08 62.0 117 30.8
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 3.7e-08 62.0 117 30.8
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 4.8e-08 61.6 114 31.6
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 4.8e-08 61.6 96 34.4
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 6.2e-08 61.2 112 33.9
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 6.2e-08 61.2 126 28.6
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 6.2e-08 61.2 126 28.6
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 6.2e-08 61.2 72 36.1
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 6.2e-08 61.2 89 36.0
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 6.2e-08 61.2 100 30.0
A07p23300 Brassica napus HOM05D017967 ORTHO05D003038 8.1e-08 60.8 116 33.6
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 8.1e-08 60.8 102 34.3
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 1.1e-07 60.5 96 36.5
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-07 60.5 111 32.4
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.4e-07 60.1 42 52.4
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.8e-07 59.7 118 29.7
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 2.4e-07 59.3 118 33.1
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 2.4e-07 59.3 115 32.2
C05p10610 Brassica napus HOM05D007482 ORTHO05D003038 2.4e-07 59.3 109 30.3
BolC5t29803H Brassica oleracea HOM05D007482 ORTHO05D003038 2.4e-07 59.3 109 30.3
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 2.4e-07 59.3 115 32.2
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 2.4e-07 59.3 116 36.2
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 2.4e-07 59.3 87 33.3
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.4e-07 59.3 93 31.2
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 5.3e-07 58.2 85 34.1
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 5.3e-07 58.2 89 36.0
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 5.3e-07 58.2 88 35.2
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 6.9e-07 57.8 129 29.5
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 6.9e-07 57.8 110 31.8
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 6.9e-07 57.8 115 28.7
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 6.9e-07 57.8 122 32.0
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 9.0e-07 57.4 42 52.4
Duzib235G1402 Durio zibethinus HOM05D005672 ORTHO05D003038 9.0e-07 57.4 42 50.0
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 1.2e-06 57.0 111 30.6
C06p24320 Brassica napus HOM05D017967 ORTHO05D003038 1.5e-06 56.6 116 32.8
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-06 56.6 102 32.4
Atru.chr1.3239 Acer truncatum HOM05D005672 ORTHO05D003038 2.0e-06 56.2 112 34.8
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-06 56.2 133 28.6
C06p24420 Brassica napus HOM05D017967 ORTHO05D003038 2.0e-06 56.2 119 30.3
BolC6t37589H Brassica oleracea HOM05D017967 ORTHO05D003038 2.0e-06 56.2 119 30.3
BraA07t29995Z Brassica rapa HOM05D017967 ORTHO05D003038 2.0e-06 56.2 117 33.3
MELO3C028179.2 Cucumis melo HOM05D028203 ORTHO05D029165 2.6e-06 55.8 91 35.2
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 2.6e-06 55.8 93 34.4
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.6e-06 55.8 62 41.9
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 3.4e-06 55.5 114 30.7
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 3.4e-06 55.5 103 31.1
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 3.4e-06 55.5 118 29.7
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.4e-06 55.5 109 31.2
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 4.5e-06 55.1 103 35.0
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 4.5e-06 55.1 113 29.2
Duzib235G0878 Durio zibethinus HOM05D005672 ORTHO05D003038 5.8e-06 54.7 103 35.0
BcaB07g32750 Brassica carinata HOM05D007482 ORTHO05D003038 7.6e-06 54.3 109 31.2
A07p23290 Brassica napus HOM05D017967 ORTHO05D003038 7.6e-06 54.3 116 30.2
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 7.6e-06 54.3 124 31.5
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 1.0e-05 53.9 133 29.3
RcHm_v2.0_Chr7g0236281 Rosa chinensis HOM05D005672 ORTHO05D003038 1.0e-05 53.9 104 36.5
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 1.0e-05 53.9 88 29.5


User provided reference genes

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