Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 1.1e-65 253.1 119 100.0
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 6.2e-37 157.5 122 68.0
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 1.3e-29 133.3 119 57.1
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 3.4e-27 125.2 119 53.8
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 5.8e-27 124.4 120 51.7
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 1.7e-26 122.9 119 52.1
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 6.5e-26 120.9 110 53.6
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 9.3e-25 117.1 110 53.6
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 2.1e-24 115.9 110 52.7
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 2.1e-24 115.9 111 53.2
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.7e-24 115.5 108 52.8
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 6.1e-24 114.4 108 53.7
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 5.1e-23 111.3 112 49.1
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-22 110.2 110 48.2
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-22 110.2 110 48.2
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 1.5e-22 109.8 112 48.2
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 1.9e-22 109.4 110 47.3
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 3.3e-22 108.6 114 48.2
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 5.7e-22 107.8 111 49.5
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 5.7e-22 107.8 114 49.1
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 5.7e-22 107.8 126 50.8
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 7.4e-22 107.5 109 51.4
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 7.4e-22 107.5 114 49.1
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 9.7e-22 107.1 112 47.3
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 3.7e-21 105.1 104 49.0
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 6.3e-21 104.4 98 48.0
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 8.2e-21 104.0 107 50.5
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 8.2e-21 104.0 116 46.6
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.1e-20 103.6 112 46.4
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 1.4e-20 103.2 112 43.8
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.8e-20 102.8 111 47.7
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 9.0e-20 100.5 111 48.6
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 2.0e-19 99.4 105 47.6
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 3.4e-19 98.6 114 48.2
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 4.5e-19 98.2 102 48.0
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 1.3e-18 96.7 117 40.2
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 1.3e-18 96.7 112 42.9
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 6.5e-18 94.4 120 43.3
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 8.5e-18 94.0 112 47.3
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.1e-17 93.6 112 43.8
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 1.9e-17 92.8 116 43.1
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.5e-17 92.4 84 48.8
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 3.2e-17 92.0 119 42.0
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 9.4e-17 90.5 89 51.7
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.2e-16 90.1 124 40.3
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.1e-16 89.4 110 39.1
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 2.7e-16 89.0 118 37.3
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 4.6e-16 88.2 117 36.8
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 6.1e-16 87.8 94 45.7
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 6.1e-16 87.8 112 40.2
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 6.1e-16 87.8 112 40.2
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 7.9e-16 87.4 113 42.5
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 7.9e-16 87.4 115 34.8
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.0e-15 87.0 109 43.1
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.0e-15 87.0 115 34.8
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 1.0e-15 87.0 115 40.0
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 1.4e-15 86.7 115 40.0
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 1.8e-15 86.3 115 40.0
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 2.3e-15 85.9 112 39.3
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 2.3e-15 85.9 102 40.2
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.0e-15 85.5 115 33.9
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 3.0e-15 85.5 115 39.1
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 3.0e-15 85.5 103 46.6
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 5.1e-15 84.7 123 40.7
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 5.1e-15 84.7 78 48.7
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 5.1e-15 84.7 117 40.2
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 5.1e-15 84.7 109 39.4
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 6.7e-15 84.3 107 42.1
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 8.8e-15 84.0 129 37.2
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 8.8e-15 84.0 109 42.2
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-14 83.6 110 39.1
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 1.5e-14 83.2 114 39.5
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 2.5e-14 82.4 116 38.8
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 3.3e-14 82.0 87 44.8
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 5.7e-14 81.3 112 39.3
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 7.4e-14 80.9 125 39.2
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 1.3e-13 80.1 102 42.2
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.7e-13 79.7 110 42.7
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.7e-13 79.7 111 39.6
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 2.2e-13 79.3 124 35.5
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 2.2e-13 79.3 115 37.4
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 2.2e-13 79.3 107 41.1
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 2.2e-13 79.3 107 41.1
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.8e-13 79.0 120 35.8
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 3.7e-13 78.6 117 37.6
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 4.8e-13 78.2 135 36.3
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 8.2e-13 77.4 114 39.5
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 1.1e-12 77.0 135 34.8
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.4e-12 76.6 71 50.7
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 1.4e-12 76.6 107 41.1
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 1.8e-12 76.3 118 36.4
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-12 76.3 118 36.4
Sed0015260 Sechium edule HOM05D005672 ORTHO05D003038 1.8e-12 76.3 108 41.7
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 2.4e-12 75.9 102 40.2
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 2.4e-12 75.9 115 36.5
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 3.1e-12 75.5 88 44.3
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 3.1e-12 75.5 118 38.1
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 3.1e-12 75.5 112 42.0
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 4.1e-12 75.1 110 37.3
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 6.9e-12 74.3 108 36.1
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 9.1e-12 73.9 86 44.2
Ciclev10027058m.g Citrus clementina HOM05D005672 ORTHO05D003038 9.1e-12 73.9 87 47.1
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 9.1e-12 73.9 129 34.9
MELO3C030573.2 Cucumis melo HOM05D005672 ORTHO05D003038 1.2e-11 73.6 104 39.4
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 1.5e-11 73.2 117 35.9
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-11 73.2 117 35.9
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 1.5e-11 73.2 117 35.9
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 1.5e-11 73.2 117 35.9
CiPaw.02G152000 Carya illinoinensis HOM05D005672 ORTHO05D003038 1.5e-11 73.2 104 37.5
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 1.5e-11 73.2 115 37.4
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.5e-11 73.2 114 31.6
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-11 72.8 118 35.6
Nn2g15314 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.5e-11 71.6 99 41.4
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.5e-11 71.6 70 48.6
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 4.5e-11 71.6 107 34.6
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 5.9e-11 71.2 115 37.4
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 7.7e-11 70.9 105 39.0
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 7.7e-11 70.9 110 37.3
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 7.7e-11 70.9 117 36.8
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 1.0e-10 70.5 129 31.8
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 1.0e-10 70.5 60 56.7
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.0e-10 70.5 111 40.5
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.0e-10 70.5 108 38.9
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 1.7e-10 69.7 128 32.0
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 1.7e-10 69.7 122 33.6
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.2e-10 69.3 110 37.3
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 2.9e-10 68.9 113 35.4
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 2.9e-10 68.9 122 35.2
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.9e-10 68.9 119 36.1
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.8e-10 68.6 85 41.2
Duzib235G0878 Durio zibethinus HOM05D005672 ORTHO05D003038 3.8e-10 68.6 102 35.3
GSVIVG01017351001 Vitis vinifera HOM05D009909 ORTHO05D011748 3.8e-10 68.6 100 32.0
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 5.0e-10 68.2 122 36.1
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 5.0e-10 68.2 129 30.2
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 5.0e-10 68.2 132 31.1
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 5.0e-10 68.2 131 31.3
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 6.5e-10 67.8 101 41.6
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 6.5e-10 67.8 85 37.6
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-09 66.6 117 35.0
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-09 66.6 130 30.0
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-09 66.6 135 30.4
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.4e-09 66.6 119 37.0
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 1.4e-09 66.6 105 38.1
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.9e-09 66.2 119 32.8
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 1.9e-09 66.2 131 30.5
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 2.5e-09 65.9 94 35.1
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 2.5e-09 65.9 122 35.2
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 2.5e-09 65.9 128 33.6
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 2.5e-09 65.9 128 33.6
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 3.2e-09 65.5 118 36.4
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 4.2e-09 65.1 111 36.0
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 4.2e-09 65.1 132 34.8
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 7.2e-09 64.3 103 33.0
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 7.2e-09 64.3 117 32.5
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 7.2e-09 64.3 103 33.0
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 7.2e-09 64.3 120 37.5
CsaV3_7G033040 Cucumis sativus L. HOM05D005672 ORTHO05D003038 9.4e-09 63.9 117 32.5
Migut.I00854 Erythranthe guttata HOM05D033963 ORTHO05D035179 9.4e-09 63.9 99 33.3
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-08 63.5 111 35.1
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 1.6e-08 63.2 116 35.3
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.6e-08 63.2 110 35.5
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 2.1e-08 62.8 117 34.2
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 2.1e-08 62.8 84 38.1
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 2.7e-08 62.4 76 42.1
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.7e-08 62.4 125 33.6
Aqoxy4G01164 Aquilegia oxysepala HOM05D007540 ORTHO05D009531 3.6e-08 62.0 132 31.8
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 3.6e-08 62.0 113 33.6
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 3.6e-08 62.0 113 33.6
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 4.7e-08 61.6 114 36.0
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 6.1e-08 61.2 120 31.7
C08p47180 Brassica napus HOM05D007482 ORTHO05D003038 7.9e-08 60.8 105 37.1
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 7.9e-08 60.8 123 32.5
Duzib235G1402 Durio zibethinus HOM05D005672 ORTHO05D003038 1.0e-07 60.5 114 30.7
SGA_v2.0_scaffold5G02600 Striga asiatica HOM05D005672 ORTHO05D003038 1.8e-07 59.7 82 35.4
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 2.3e-07 59.3 96 33.3
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 2.3e-07 59.3 96 33.3
ClCG09G002220 Citrullus lanatus HOM05D005672 ORTHO05D003038 2.3e-07 59.3 97 35.1
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 3.0e-07 58.9 108 32.4
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 3.0e-07 58.9 116 31.9
Atru.chr1.3239 Acer truncatum HOM05D005672 ORTHO05D003038 3.9e-07 58.5 113 32.7
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 6.7e-07 57.8 132 34.1
MELO3C023360.2 Cucumis melo HOM05D005672 ORTHO05D003038 6.7e-07 57.8 86 37.2
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-06 56.2 96 32.3
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 2.0e-06 56.2 104 32.7
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 2.6e-06 55.8 39 59.0
Ciclev10026837m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.3e-06 55.5 58 48.3
Potri.003G056450 Populus trichocarpa HOM05D005672 ORTHO05D003038 4.4e-06 55.1 96 37.5
THA.LOC104818205 Tarenaya hassleriana HOM05D005672 ORTHO05D003038 4.4e-06 55.1 96 30.2
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 5.7e-06 54.7 125 30.4
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 7.4e-06 54.3 95 33.7


User provided reference genes

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