Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 6.9e-81 303.9 153 100.0
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 8.8e-76 287.0 153 92.2
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.5e-75 286.2 153 92.2
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 4.5e-72 274.6 153 87.6
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.5e-72 274.6 153 86.3
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 4.5e-72 274.6 153 86.3
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 5.9e-72 274.2 153 86.3
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 1.3e-71 273.1 153 85.0
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 1.7e-71 272.7 155 87.7
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.2e-71 272.3 153 85.0
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 8.5e-71 270.4 153 84.3
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.1e-70 270.0 155 87.1
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.4e-70 269.6 152 86.2
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 3.2e-70 268.5 153 83.0
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 3.2e-70 268.5 153 84.3
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.2e-70 268.1 153 85.0
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 4.2e-70 268.1 151 87.4
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 9.4e-70 266.9 151 86.8
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 1.2e-69 266.5 153 82.4
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.2e-69 266.5 148 85.8
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 1.6e-69 266.2 153 83.7
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 1.6e-69 266.2 153 86.3
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.6e-69 266.2 154 85.7
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 1.6e-69 266.2 153 82.4
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.1e-69 265.8 151 84.8
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 2.1e-69 265.8 150 86.0
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 2.1e-69 265.8 151 84.1
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 2.1e-69 265.8 151 84.8
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 2.7e-69 265.4 153 83.7
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 2.7e-69 265.4 150 86.0
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 3.6e-69 265.0 151 84.1
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 3.6e-69 265.0 153 80.4
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 3.6e-69 265.0 150 86.0
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 4.7e-69 264.6 153 85.6
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 7.9e-69 263.8 153 82.4
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 7.9e-69 263.8 153 82.4
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.0e-68 263.5 153 84.3
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.4e-68 263.1 150 84.7
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 1.4e-68 263.1 153 82.4
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.4e-68 263.1 153 83.0
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 1.8e-68 262.7 151 84.8
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 83.0
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 81.7
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 1.8e-68 262.7 153 85.0
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 2.3e-68 262.3 151 81.5
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.3e-68 262.3 151 84.8
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 3.0e-68 261.9 150 84.0
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 3.0e-68 261.9 152 84.9
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 3.9e-68 261.5 150 82.0
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.1e-68 261.2 153 85.6
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.1e-68 261.2 151 82.8
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 6.7e-68 260.8 153 81.7
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.1e-67 260.0 145 84.8
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 5.7e-67 257.7 145 84.1
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 5.7e-67 257.7 153 79.1
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 5.7e-67 257.7 153 80.4
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 7.4e-67 257.3 150 80.7
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 79.1
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 79.7
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 79.1
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 81.0
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-66 256.5 150 80.7
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 1.3e-66 256.5 151 80.8
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.3e-66 256.5 153 80.4
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.7e-66 256.1 153 79.1
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.7e-66 256.1 151 81.5
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 2.2e-66 255.8 153 78.4
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 2.2e-66 255.8 153 81.7
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.8e-66 255.4 150 82.0
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 79.7
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 3.7e-66 255.0 151 80.1
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 4.8e-66 254.6 151 78.8
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 4.8e-66 254.6 153 77.8
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 4.8e-66 254.6 152 80.9
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 8.2e-66 253.8 153 78.4
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 8.2e-66 253.8 153 76.5
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 1.1e-65 253.4 153 77.8
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.4e-65 253.1 153 78.4
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.4e-65 253.1 151 81.5
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.8e-65 252.7 153 80.4
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.8e-65 252.7 153 79.1
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 2.4e-65 252.3 153 79.7
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 2.4e-65 252.3 151 79.5
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 3.1e-65 251.9 152 78.3
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 5.3e-65 251.1 151 79.5
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.6e-64 249.6 153 79.1
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-64 248.8 153 79.1
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 5.9e-64 247.7 150 80.0
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 1.7e-63 246.1 153 75.8
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 2.2e-63 245.7 151 75.5
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 2.9e-63 245.4 151 78.1
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 8.5e-63 243.8 151 77.5
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 73.9
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 75.2
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 3.2e-62 241.9 150 75.3
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.2e-62 241.9 150 78.7
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 5.5e-62 241.1 153 73.9
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 5.5e-62 241.1 155 78.7
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 5.5e-62 241.1 153 71.9
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.2e-61 240.0 151 72.8
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.6e-61 239.6 155 77.4
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 1.6e-61 239.6 153 72.5
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 2.7e-61 238.8 153 73.9
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 2.7e-61 238.8 149 76.5
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 6.1e-61 237.7 153 71.9
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 1.4e-60 236.5 150 74.0
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.8e-60 236.1 150 72.7
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.8e-60 236.1 150 72.0
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.8e-60 236.1 153 73.2
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 2.3e-60 235.7 150 72.0
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 3.0e-60 235.3 151 76.2
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 5.2e-60 234.6 152 70.4
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 5.2e-60 234.6 153 71.9
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 8.8e-60 233.8 151 70.9
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 8.8e-60 233.8 148 73.0
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 1.1e-59 233.4 150 72.7
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.5e-59 233.0 150 71.3
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 3.3e-59 231.9 148 77.0
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.4e-57 226.5 153 69.9
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 5.3e-57 224.6 151 69.5
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 7.0e-57 224.2 168 64.3
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 7.0e-57 224.2 150 74.7
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 4.7e-53 211.5 153 63.4
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 1.4e-52 209.9 153 66.0
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.8e-52 209.5 143 70.6
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 5.2e-52 208.0 120 82.5
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 5.2e-52 208.0 119 81.5
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.2e-51 206.8 122 80.3
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 2.0e-51 206.1 145 62.1
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 9.1e-49 197.2 111 82.9
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.0e-48 196.1 153 64.1
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 5.0e-47 191.4 111 79.3
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 8.5e-47 190.7 128 68.8
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.8e-44 183.0 153 54.2
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 1.6e-40 169.9 181 52.5
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.5e-35 153.3 95 80.0
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 9.8e-35 150.6 149 47.7
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 7.8e-32 141.0 75 85.3
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 3.0e-31 139.0 78 83.3
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 6.6e-31 137.9 124 59.7
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 9.5e-30 134.0 144 47.9
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.2e-29 133.7 101 66.3
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.0e-28 130.6 75 77.3
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 5.2e-28 128.3 75 85.3
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 9.8e-27 124.0 67 82.1
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 6.4e-26 121.3 78 78.2
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.1e-25 120.6 65 81.5
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 1.4e-25 120.2 75 78.7
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 5.4e-25 118.2 81 74.1
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.6e-24 116.7 89 68.5
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.1e-20 104.0 149 37.6
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.2e-13 80.5 48 85.4
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.1e-09 67.4 49 69.4


User provided reference genes

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