Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 0.0e+00 1169.8 738 100.0
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 8.7e-214 747.7 742 69.9
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 2.5e-168 596.7 710 60.8
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 1.2e-167 594.3 708 59.9
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 5.6e-160 568.9 717 52.6
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 9.9e-149 531.6 697 56.7
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 8.7e-137 491.9 623 54.7
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 9.0e-134 481.9 752 51.5
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.4e-131 474.6 684 45.2
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 3.2e-131 473.4 534 53.7
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 7.8e-130 468.8 713 53.2
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 6.6e-129 465.7 675 49.3
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 8.7e-129 465.3 534 53.7
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.2e-125 454.9 534 52.6
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.9e-123 447.6 568 50.5
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 9.3e-123 445.3 564 50.4
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.3e-121 441.4 695 50.5
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.5e-120 438.0 760 45.8
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.3e-120 436.8 564 49.8
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.1e-118 431.8 788 47.0
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 2.9e-116 423.7 742 50.5
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 1.1e-112 411.8 703 45.1
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 9.6e-112 408.7 717 49.9
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 2.8e-111 407.1 715 44.2
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 3.7e-111 406.8 717 49.9
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 3.7e-111 406.8 704 39.9
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.5e-109 401.4 529 48.0
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 5.8e-109 399.4 686 40.1
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.3e-108 398.3 703 41.1
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 5.1e-105 386.3 651 43.5
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 6.7e-105 386.0 713 47.7
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 4.3e-104 383.3 678 43.5
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 1.8e-102 377.9 694 47.6
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 3.1e-102 377.1 659 44.6
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 6.9e-102 375.9 618 51.0
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 2.2e-100 370.9 727 41.7
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 2.2e-100 370.9 714 45.2
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 5.0e-100 369.8 524 44.8
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 1.1e-99 368.6 557 51.5
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 2.3e-97 360.9 696 40.5
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 6.7e-97 359.4 542 45.2
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 3.3e-96 357.1 560 51.8
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.3e-96 356.7 723 44.0
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 9.7e-96 355.5 666 44.6
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.3e-95 355.1 720 40.3
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 6.3e-95 352.8 528 45.6
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 1.8e-94 351.3 515 44.5
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 5.3e-94 349.7 716 42.5
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 3.4e-93 347.1 708 42.8
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 4.5e-93 346.7 659 44.2
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.0e-92 345.5 713 44.2
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.3e-92 345.1 716 44.1
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.9e-91 341.3 718 45.7
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 1.9e-91 341.3 708 42.7
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 9.4e-91 339.0 689 43.4
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 2.7e-90 337.4 529 42.0
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 2.3e-89 334.3 708 41.0
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.5e-88 331.6 533 41.3
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.5e-88 331.6 741 41.0
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.5e-88 331.6 713 44.3
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 2.0e-88 331.3 703 42.7
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 8.2e-87 325.9 716 40.4
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 3.1e-86 323.9 506 42.7
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 2.6e-85 320.9 497 42.3
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 8.5e-84 315.8 679 44.6
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 1.1e-80 305.4 583 39.1
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 1.5e-80 305.1 724 39.9
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.5e-80 305.1 726 41.3
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 2.6e-80 304.3 688 42.4
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 2.4e-78 297.7 422 44.3
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 3.1e-78 297.4 532 39.5
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 2.6e-77 294.3 527 37.6
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 3.5e-77 293.9 685 36.1
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.9e-77 293.1 714 43.4
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 2.2e-76 291.2 684 33.0
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 3.8e-76 290.4 335 52.2
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 5.0e-76 290.0 711 38.4
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 1.9e-75 288.1 526 37.8
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.9e-75 288.1 670 40.0
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.7e-74 284.3 713 34.2
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 4.7e-74 283.5 687 42.2
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 1.2e-72 278.9 706 36.7
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 3.7e-71 273.9 322 55.0
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 1.8e-70 271.6 713 36.0
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 5.3e-70 270.0 531 37.3
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 2.9e-68 264.2 708 37.0
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 6.5e-68 263.1 525 35.8
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 3.2e-67 260.8 717 36.0
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 3.2e-67 260.8 679 35.2
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 1.6e-66 258.5 496 38.1
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 3.6e-66 257.3 717 35.0
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.4e-65 255.4 520 36.9
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.3e-63 248.8 607 37.1
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 3.1e-62 244.2 534 37.3
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 3.5e-61 240.7 528 35.2
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 4.5e-61 240.4 525 33.0
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 1.7e-60 238.4 683 35.9
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 2.9e-60 237.7 526 33.1
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 3.3e-59 234.2 749 29.5
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 2.8e-58 231.1 689 37.4
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.0e-57 229.2 709 36.4
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 5.2e-57 226.9 523 33.1
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.5e-56 225.3 279 49.5
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 3.4e-56 224.2 682 33.6
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 5.7e-56 223.4 695 32.8
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 9.8e-56 222.6 682 33.6
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 9.8e-56 222.6 682 33.6
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 1.3e-55 222.2 535 33.8
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 1.7e-55 221.9 428 38.3
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.1e-54 217.6 626 29.2
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 5.4e-54 216.9 490 37.1
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 5.4e-54 216.9 506 34.2
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.7e-52 211.8 695 34.5
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.7e-52 211.8 695 34.5
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.7e-52 211.8 263 51.7
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 4.3e-51 207.2 487 35.3
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 5.6e-51 206.8 696 30.3
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 9.5e-51 206.1 716 27.1
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 2.0e-48 198.4 522 29.9
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 1.7e-47 195.3 524 30.0
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 2.9e-47 194.5 714 34.3
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 4.9e-47 193.7 321 51.1
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 2.3e-44 184.9 705 35.9
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 5.0e-44 183.7 688 31.7
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 3.3e-43 181.0 158 65.8
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 8.0e-42 176.4 166 57.8
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 2.0e-40 171.8 529 29.7
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 2.6e-40 171.4 522 30.3
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 1.3e-39 169.1 691 34.7
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 1.9e-38 165.2 503 29.2
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 1.9e-38 165.2 717 28.5
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 3.2e-38 164.5 281 42.3
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 4.1e-38 164.1 719 28.5
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.6e-37 162.2 244 41.4
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 5.1e-36 157.1 713 27.9
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 8.1e-34 149.8 546 30.6
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 8.9e-33 146.4 113 74.3
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.5e-32 145.6 115 68.7
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 2.0e-32 145.2 665 29.0
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.6e-32 144.8 293 46.4
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 2.2e-31 141.7 607 26.0
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.9e-30 138.7 485 25.8
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 6.4e-23 113.6 298 51.7
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 4.2e-22 110.9 418 25.4
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 1.2e-21 109.4 381 25.7
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 1.7e-20 105.5 297 28.6
BolC1t04793H Brassica oleracea HOM05D004642 ORTHO05D005466 2.4e-17 95.1 433 27.9
MD09G1213400 Malus domestica HOM05D004642 ORTHO05D005466 9.0e-17 93.2 77 70.1
A03p54580 Brassica napus HOM05D004642 ORTHO05D005466 2.6e-16 91.7 339 35.7
BraA03t14525Z Brassica rapa HOM05D004642 ORTHO05D005466 2.6e-16 91.7 339 35.7
BolC1t04796H Brassica oleracea HOM05D004642 ORTHO05D005466 4.9e-15 87.4 269 42.8
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.2e-13 82.8 87 54.0
Oeu063962.1 Olea europaea HOM05D004642 ORTHO05D005466 1.3e-10 72.8 350 29.4
TAR636G1625 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.1e-09 68.2 57 59.6
Potri.013G109600 Populus trichocarpa HOM05D004901 ORTHO05D005592 1.2e-08 66.2 90 50.0


User provided reference genes

Program Settings