Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 3.0e-47 192.2 155 100.0
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 2.1e-29 132.9 104 69.2
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 1.9e-17 93.2 104 56.7
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.9e-17 93.2 104 60.6
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 7.1e-17 91.3 46 91.3
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 2.1e-16 89.7 45 91.1
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.1e-16 89.7 45 91.1
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 6.1e-16 88.2 68 66.2
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 7.9e-16 87.8 108 67.6
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 7.9e-16 87.8 56 75.0
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 1.0e-15 87.4 60 70.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.0e-15 85.9 69 63.8
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.0e-15 85.9 69 63.8
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 3.0e-15 85.9 63 71.4
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 3.9e-15 85.5 43 90.7
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 5.1e-15 85.1 113 66.4
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 6.7e-15 84.7 73 63.0
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.1e-14 84.0 43 88.4
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 1.1e-14 84.0 53 73.6
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.9e-14 83.2 55 70.9
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 2.5e-14 82.8 46 82.6
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 2.5e-14 82.8 46 82.6
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 2.5e-14 82.8 72 61.1
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 3.3e-14 82.4 71 64.8
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 4.3e-14 82.0 57 70.2
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 4.3e-14 82.0 50 78.0
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 4.3e-14 82.0 70 60.0
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 5.7e-14 81.6 113 69.0
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 5.7e-14 81.6 42 88.1
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 5.7e-14 81.6 60 70.0
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 7.4e-14 81.3 41 90.2
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 9.7e-14 80.9 44 86.4
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.3e-13 80.5 55 70.9
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.3e-13 80.5 43 86.0
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.3e-13 80.5 43 86.0
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 1.6e-13 80.1 47 76.6
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.6e-13 80.1 68 60.3
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 1.6e-13 80.1 62 67.7
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.2e-13 79.7 56 67.9
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.2e-13 79.7 56 67.9
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.2e-13 79.7 56 67.9
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 2.2e-13 79.7 65 67.7
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 2.2e-13 79.7 48 77.1
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.2e-13 79.7 57 70.2
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.2e-13 79.7 41 90.2
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.8e-13 79.3 48 75.0
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.8e-13 79.3 69 63.8
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.8e-13 79.3 56 67.9
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 2.8e-13 79.3 60 66.7
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 3.7e-13 79.0 43 86.0
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.7e-13 79.0 56 67.9
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 3.7e-13 79.0 37 94.6
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 3.7e-13 79.0 41 85.4
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 3.7e-13 79.0 39 92.3
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 4.8e-13 78.6 57 66.7
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.8e-13 78.6 56 66.1
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.8e-13 78.6 43 83.7
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 4.8e-13 78.6 52 71.2
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 4.8e-13 78.6 52 71.2
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 6.3e-13 78.2 41 87.8
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 6.3e-13 78.2 71 59.2
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 6.3e-13 78.2 43 83.7
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 6.3e-13 78.2 58 67.2
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 8.2e-13 77.8 52 71.2
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 8.2e-13 77.8 41 82.9
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 8.2e-13 77.8 53 69.8
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 8.2e-13 77.8 49 75.5
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.1e-12 77.4 41 87.8
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.1e-12 77.4 41 85.4
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.1e-12 77.4 41 87.8
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.1e-12 77.4 41 85.4
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 1.4e-12 77.0 44 84.1
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 1.4e-12 77.0 44 84.1
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.4e-12 77.0 41 85.4
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 1.4e-12 77.0 56 64.3
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.4e-12 77.0 41 82.9
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.8e-12 76.6 40 87.5
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.8e-12 76.6 49 79.6
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.8e-12 76.6 49 79.6
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.8e-12 76.6 100 46.0
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 2.4e-12 76.3 41 85.4
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 2.4e-12 76.3 57 68.4
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 2.4e-12 76.3 61 68.9
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 2.4e-12 76.3 57 68.4
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 2.4e-12 76.3 57 68.4
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 2.4e-12 76.3 48 72.9
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 3.1e-12 75.9 42 81.0
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 3.1e-12 75.9 59 59.3
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 3.1e-12 75.9 53 69.8
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 3.1e-12 75.9 72 59.7
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 3.1e-12 75.9 42 83.3
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 4.1e-12 75.5 54 70.4
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 4.1e-12 75.5 54 70.4
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 4.1e-12 75.5 54 70.4
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 4.1e-12 75.5 56 60.7
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 4.1e-12 75.5 40 85.0
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 5.3e-12 75.1 52 71.2
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 5.3e-12 75.1 57 70.2
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 5.3e-12 75.1 56 64.3
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 5.3e-12 75.1 42 81.0
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 6.9e-12 74.7 42 83.3
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 6.9e-12 74.7 97 48.5
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 6.9e-12 74.7 43 76.7
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 9.0e-12 74.3 39 87.2
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 1.2e-11 73.9 130 59.2
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 2.6e-11 72.8 64 57.8
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 2.6e-11 72.8 61 63.9
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 2.6e-11 72.8 41 78.0
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 2.6e-11 72.8 54 70.4
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 3.4e-11 72.4 36 88.9
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 3.4e-11 72.4 33 97.0
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.5e-11 72.0 42 76.2
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 4.5e-11 72.0 40 85.0
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 1.0e-10 70.9 42 76.2
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 1.0e-10 70.9 44 77.3
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.7e-10 70.1 33 93.9
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.2e-10 69.7 33 90.9
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 2.2e-10 69.7 54 66.7
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 3.8e-10 68.9 61 54.1
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 5.0e-10 68.6 36 86.1
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 5.0e-10 68.6 33 90.9
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.1e-09 67.4 33 84.8
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 1.9e-09 66.6 33 84.8
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 3.2e-09 65.9 33 84.8
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 1.2e-08 63.9 42 66.7
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 4.6e-08 62.0 40 67.5


User provided reference genes

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