Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 2.3e-230 802.0 434 100.0
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 2.1e-199 699.1 436 89.4
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 1.9e-192 676.0 435 83.0
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.5e-192 674.5 435 84.6
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.2e-189 666.8 435 84.1
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 2.0e-189 666.0 429 82.3
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 5.7e-189 664.5 419 88.3
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 9.8e-189 663.7 435 83.7
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 2.8e-188 662.1 434 80.0
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 5.9e-186 654.4 435 79.8
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 7.7e-186 654.1 435 83.2
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 3.8e-185 651.7 427 81.0
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 5.0e-185 651.4 433 78.5
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 6.6e-185 651.0 437 79.4
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 5.5e-184 647.9 425 79.1
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 7.2e-184 647.5 439 78.6
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 4.7e-183 644.8 425 80.2
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 6.1e-183 644.4 427 84.8
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 1.0e-182 643.7 425 77.9
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.0e-182 643.7 437 77.8
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 3.0e-182 642.1 431 82.6
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 5.2e-182 641.3 427 81.7
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 5.2e-182 641.3 435 83.0
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 6.8e-182 641.0 425 82.4
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.0e-181 639.4 427 80.6
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 4.4e-181 638.3 435 80.2
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.7e-180 635.2 435 80.5
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 8.3e-180 634.0 450 77.6
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 1.8e-179 632.9 425 76.9
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 3.1e-179 632.1 418 79.4
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.2e-178 630.2 461 77.0
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 3.5e-178 628.6 426 76.8
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 2.9e-177 625.5 435 81.6
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 1.5e-176 623.2 426 75.6
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 2.5e-176 622.5 428 76.4
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 4.3e-176 621.7 426 76.3
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 1.6e-175 619.8 425 77.6
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 2.8e-175 619.0 426 76.5
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 8.0e-175 617.5 427 75.9
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 1.4e-174 616.7 418 76.6
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 1.4e-174 616.7 435 74.7
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 6.8e-174 614.4 427 81.3
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 8.9e-174 614.0 425 80.0
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.2e-173 613.6 435 75.2
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.5e-173 613.2 421 77.7
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 5.8e-173 611.3 434 73.7
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 7.5e-173 610.9 426 74.2
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 2.2e-172 609.4 425 80.0
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 2.2e-172 609.4 425 76.5
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 2.2e-172 609.4 425 76.5
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 2.9e-172 609.0 426 73.7
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 3.7e-172 608.6 425 76.2
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 3.7e-172 608.6 425 76.2
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 3.7e-172 608.6 425 76.2
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 3.7e-172 608.6 429 79.3
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 1.1e-171 607.1 426 73.9
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 1.4e-171 606.7 426 74.4
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.9e-171 606.3 425 76.2
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 1.2e-170 603.6 426 73.7
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.6e-170 603.2 417 74.6
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 6.0e-170 601.3 429 75.1
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 6.0e-170 601.3 425 75.8
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 6.0e-170 601.3 429 74.8
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 6.0e-170 601.3 420 80.7
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 2.3e-169 599.4 469 70.4
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 5.0e-169 598.2 435 74.9
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 5.0e-169 598.2 417 74.8
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 5.0e-169 598.2 423 72.6
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 8.6e-169 597.4 429 74.6
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.5e-168 596.7 420 74.0
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.9e-168 596.3 438 79.2
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 7.3e-168 594.3 416 74.0
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 2.8e-167 592.4 417 76.3
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 6.2e-167 591.3 436 72.9
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 8.0e-167 590.9 426 72.3
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.1e-166 590.5 416 73.6
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 2.3e-166 589.3 428 74.3
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.3e-166 589.3 427 72.8
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 2.0e-165 586.3 427 71.4
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 4.4e-165 585.1 449 71.0
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 2.9e-164 582.4 417 74.3
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 3.7e-164 582.0 425 73.6
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 3.7e-164 582.0 436 71.1
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 5.4e-163 578.2 400 75.5
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 4.6e-162 575.1 418 73.2
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.0e-161 573.9 461 69.8
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 1.0e-161 573.9 420 78.3
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 1.3e-161 573.5 416 72.8
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.7e-161 573.2 417 71.2
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.1e-160 570.5 427 70.5
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 1.9e-160 569.7 425 72.2
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 1.9e-160 569.7 418 71.8
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 4.3e-160 568.5 425 72.5
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 1.8e-158 563.1 507 61.7
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 3.7e-156 555.4 376 76.1
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 2.1e-154 549.7 417 72.7
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 4.6e-154 548.5 416 68.5
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 7.8e-154 547.7 451 68.3
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 8.6e-153 544.3 386 81.3
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 2.5e-152 542.7 481 63.6
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 3.3e-152 542.3 438 74.2
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 3.3e-152 542.3 522 63.8
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 9.5e-152 540.8 439 69.0
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 2.8e-151 539.3 426 67.8
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 1.7e-148 530.0 485 67.2
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 3.8e-148 528.9 425 67.8
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 3.9e-145 518.8 397 70.5
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 1.5e-144 516.9 416 67.3
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 3.3e-144 515.8 426 65.7
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 1.8e-142 510.0 380 76.8
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 4.9e-140 501.9 433 65.1
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 6.4e-140 501.5 383 76.5
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 5.4e-139 498.4 324 85.2
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.0e-137 494.2 422 64.7
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 2.8e-135 486.1 370 71.4
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.2e-133 480.7 435 63.9
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.0e-133 479.9 411 64.2
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 1.9e-131 473.4 412 60.7
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 4.3e-128 462.2 419 63.7
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.1e-123 447.6 444 55.2
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 9.3e-123 444.5 422 57.1
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 1.8e-121 440.3 392 63.5
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 4.3e-120 435.6 344 66.9
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 2.9e-116 422.9 419 54.2
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 7.1e-115 418.3 367 63.2
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.5e-112 409.8 429 53.1
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.8e-110 403.7 431 58.2
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 2.4e-70 270.4 229 64.6
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 6.8e-65 252.3 388 37.9
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.3e-60 238.0 431 35.5
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 6.2e-42 176.0 209 58.9
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 5.4e-30 136.3 83 79.5
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 1.4e-17 95.1 55 80.0
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 4.9e-15 86.7 42 92.9
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 4.9e-15 86.7 42 92.9
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 5.8e-08 63.2 80 46.2
arahy.Tifrunner.gnm1.ann1.C7XXCR Arachis hypogaea HOM05D005555 ORTHO05D082991 8.4e-07 59.3 90 42.2


User provided reference genes

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