Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 3.5e-109 398.3 196 100.0
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 3.2e-99 365.2 194 90.7
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 6.5e-92 340.9 192 85.9
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 1.5e-91 339.7 192 84.4
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 1.2e-90 336.7 192 85.9
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.2e-90 336.7 192 84.9
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 1.5e-88 329.7 194 82.0
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 8.3e-87 323.9 194 80.9
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 4.1e-86 321.6 190 82.6
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 2.0e-85 319.3 192 80.2
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 3.5e-85 318.5 193 80.3
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 4.5e-85 318.2 191 78.5
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.3e-84 315.8 195 78.5
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 5.0e-84 314.7 190 79.5
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 6.6e-84 314.3 194 78.9
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 6.6e-84 314.3 193 77.7
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 8.6e-84 313.9 193 79.3
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 1.1e-83 313.5 193 78.2
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 1.5e-83 313.2 194 76.8
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 7.3e-83 310.8 195 77.9
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 2.8e-82 308.9 193 75.6
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 4.7e-82 308.1 193 77.2
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 8.0e-82 307.4 194 77.3
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.8e-81 306.2 193 77.2
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 1.8e-81 306.2 193 76.2
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.0e-81 305.4 193 76.7
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 5.2e-81 304.7 194 76.8
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 5.2e-81 304.7 194 75.8
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 6.8e-81 304.3 192 77.1
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 6.8e-81 304.3 192 75.5
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 8.9e-81 303.9 195 72.8
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.6e-80 302.4 191 77.0
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 4.4e-80 301.6 193 75.6
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 4.4e-80 301.6 192 75.5
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.4e-80 301.6 193 75.6
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 9.8e-80 300.4 194 74.7
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 9.8e-80 300.4 193 76.2
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 1.3e-79 300.1 194 76.3
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.3e-79 300.1 172 86.0
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.3e-79 300.1 193 74.6
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 3.7e-79 298.5 191 74.3
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 1.4e-78 296.6 191 72.3
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 1.4e-78 296.6 189 75.1
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 9.2e-78 293.9 193 74.1
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.2e-77 293.5 194 70.6
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 1.6e-77 293.1 193 76.7
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 1.6e-77 293.1 171 81.3
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 2.7e-77 292.4 186 79.0
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.7e-77 292.4 190 73.7
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 3.5e-77 292.0 194 74.2
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 7.8e-77 290.8 193 71.0
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.0e-76 290.4 192 72.4
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 1.3e-76 290.0 192 73.4
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.3e-76 290.0 191 71.7
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 2.3e-76 289.3 192 76.0
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 3.0e-76 288.9 193 72.5
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 8.6e-76 287.3 193 72.5
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 8.6e-76 287.3 185 75.1
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.5e-75 286.6 191 73.8
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.5e-75 286.6 190 72.6
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 3.3e-75 285.4 193 72.5
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 5.6e-75 284.6 187 73.3
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 1.6e-74 283.1 193 71.5
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 2.1e-74 282.7 170 78.8
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 6.2e-74 281.2 193 69.9
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.4e-73 280.0 189 72.0
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 1.4e-73 280.0 193 68.9
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 1.8e-73 279.6 179 77.1
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 3.1e-73 278.9 190 71.1
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 4.0e-73 278.5 193 69.9
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 4.0e-73 278.5 171 76.6
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 4.0e-73 278.5 193 71.5
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 8.9e-73 277.3 170 77.6
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 8.9e-73 277.3 193 70.5
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.2e-72 276.9 196 69.9
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 3.4e-72 275.4 169 78.1
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 4.4e-72 275.0 171 79.5
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 7.5e-72 274.2 194 69.6
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 7.5e-72 274.2 179 74.9
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.3e-71 273.5 188 73.4
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 3.7e-71 271.9 189 72.5
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 4.9e-71 271.6 194 69.1
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 6.4e-71 271.2 189 70.9
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.4e-70 269.2 170 77.1
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 4.1e-70 268.5 190 71.6
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 4.1e-70 268.5 190 69.5
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 5.4e-70 268.1 202 67.3
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 5.4e-70 268.1 186 71.5
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 7.0e-70 267.7 178 72.5
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 9.2e-70 267.3 194 69.1
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 1.6e-69 266.5 193 64.8
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 2.1e-69 266.2 167 76.6
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.7e-69 265.8 204 66.2
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.6e-69 265.0 191 71.2
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 1.3e-68 263.5 167 77.8
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 1.3e-68 263.5 167 77.2
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 2.3e-68 262.7 169 76.9
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 4.3e-67 258.5 177 68.9
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 1.2e-66 256.9 194 63.4
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 8.1e-66 254.2 167 72.5
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.8e-65 253.1 170 74.7
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.3e-65 252.7 176 71.0
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 4.0e-65 251.9 171 71.3
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 6.8e-65 251.1 171 74.9
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 1.5e-64 250.0 190 62.1
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 2.6e-64 249.2 187 62.0
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 3.4e-64 248.8 192 62.5
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 9.9e-64 247.3 163 70.6
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 4.9e-63 245.0 194 62.9
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.9e-62 243.0 177 67.8
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.9e-62 243.0 192 64.6
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.2e-62 242.3 190 66.3
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 3.2e-62 242.3 194 62.9
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 9.2e-62 240.7 189 67.2
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.0e-60 237.3 170 66.5
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.9e-59 233.0 139 81.3
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 2.5e-59 232.6 139 79.9
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.1e-57 227.3 171 64.9
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.4e-57 226.9 188 60.6
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.4e-57 226.1 190 57.9
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 8.9e-57 224.2 189 60.3
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 2.4e-54 216.1 192 57.3
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 1.3e-52 210.3 133 73.7
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 9.6e-51 204.1 192 53.6
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 9.6e-51 204.1 191 58.6
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 8.1e-50 201.1 118 81.4
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 1.3e-47 193.7 194 53.6
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 2.4e-46 189.5 118 78.0
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.6e-45 186.8 117 77.8
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 3.9e-44 182.2 192 47.9
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 7.3e-43 177.9 133 63.9
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 4.9e-39 165.2 171 52.6
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 1.4e-38 163.7 170 55.3
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 6.5e-23 111.7 116 53.4
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 3.4e-16 89.4 60 71.7
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 5.9e-16 88.6 53 83.0
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 1.2e-13 80.9 58 60.3
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 1.4e-12 77.4 173 36.4
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 9.7e-11 71.2 56 62.5
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 2.8e-10 69.7 171 26.9
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 6.3e-10 68.6 184 29.3
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 1.4e-09 67.4 169 30.2
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 6.9e-09 65.1 178 28.7
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 9.1e-09 64.7 175 29.1
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 1.2e-08 64.3 179 28.5
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 1.5e-08 63.9 175 28.0
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 2.0e-08 63.5 175 28.6
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 2.6e-08 63.2 182 27.5
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 3.4e-08 62.8 175 28.6
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 4.5e-08 62.4 182 27.5
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 5.9e-08 62.0 172 26.7
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 7.7e-08 61.6 175 26.9
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 7.7e-08 61.6 177 26.0
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.0e-07 61.2 194 31.4
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 1.0e-07 61.2 174 28.2
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 1.0e-07 61.2 174 28.2
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 1.3e-07 60.8 170 27.6
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 1.7e-07 60.5 171 29.2
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.7e-07 60.5 182 26.9
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 2.9e-07 59.7 178 26.4
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 2.9e-07 59.7 175 27.4
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 2.9e-07 59.7 175 28.6
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 3.8e-07 59.3 169 26.0
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 3.8e-07 59.3 172 27.9
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 3.8e-07 59.3 169 28.4
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 5.0e-07 58.9 183 28.4
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 6.5e-07 58.5 172 29.1
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 8.5e-07 58.2 176 28.4
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 8.5e-07 58.2 175 28.0
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.1e-06 57.8 162 27.2
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 1.4e-06 57.4 181 27.1
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.4e-06 57.4 175 28.0
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 1.9e-06 57.0 172 29.1
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.9e-06 57.0 174 29.3
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 5.5e-06 55.5 188 28.7
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 5.5e-06 55.5 175 28.6
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 7.2e-06 55.1 34 70.6
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 7.2e-06 55.1 174 26.4
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 7.2e-06 55.1 174 26.4
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 7.2e-06 55.1 179 27.9
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 7.2e-06 55.1 169 28.4
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 9.4e-06 54.7 184 28.3


User provided reference genes

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