Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 6.3e-51 203.8 99 100.0
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 6.5e-48 193.7 99 93.9
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 1.3e-43 179.5 99 87.9
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 1.3e-43 179.5 99 86.9
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 3.7e-43 177.9 96 89.6
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.8e-42 175.6 96 88.5
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 2.4e-42 175.3 99 85.9
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 2.4e-42 175.3 99 83.8
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 7.0e-42 173.7 99 81.8
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 1.6e-41 172.6 99 82.8
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 2.7e-41 171.8 96 85.4
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 3.5e-41 171.4 99 82.8
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 5.9e-41 170.6 98 82.7
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 5.0e-40 167.5 99 81.8
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 6.5e-40 167.2 98 80.6
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 6.5e-40 167.2 97 79.4
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.1e-39 166.4 97 78.4
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.1e-39 166.4 96 81.2
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.9e-39 165.6 99 80.8
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 1.9e-39 165.6 98 79.6
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 3.2e-39 164.9 99 81.8
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 3.2e-39 164.9 99 81.8
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 4.2e-39 164.5 98 81.6
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 4.2e-39 164.5 99 80.8
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 4.2e-39 164.5 97 78.4
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 5.5e-39 164.1 98 80.6
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 9.5e-39 163.3 91 84.6
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 9.5e-39 163.3 91 84.6
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.6e-38 162.5 91 84.6
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.1e-38 162.2 96 80.2
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 2.1e-38 162.2 98 79.6
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 2.1e-38 162.2 98 80.6
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 2.1e-38 162.2 95 78.9
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 2.8e-38 161.8 91 83.5
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 3.6e-38 161.4 94 80.9
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 3.6e-38 161.4 98 78.6
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 3.6e-38 161.4 98 78.6
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 3.6e-38 161.4 95 77.9
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 4.7e-38 161.0 96 79.2
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 4.7e-38 161.0 96 79.2
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.4e-37 159.5 96 79.2
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 2.3e-37 158.7 94 78.7
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 3.0e-37 158.3 93 81.7
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 3.0e-37 158.3 89 83.1
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.0e-37 158.3 93 79.6
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 3.0e-37 158.3 95 77.9
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 5.2e-37 157.5 87 82.8
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 5.2e-37 157.5 118 68.6
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 6.8e-37 157.1 87 83.9
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 6.8e-37 157.1 91 81.3
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 1.2e-36 156.4 98 75.5
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 1.2e-36 156.4 118 67.8
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.5e-36 156.0 97 77.3
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.5e-36 156.0 95 76.8
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 2.0e-36 155.6 94 77.7
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 2.0e-36 155.6 94 77.7
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.0e-36 155.6 94 77.7
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.4e-36 154.8 95 75.8
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.4e-36 154.8 91 79.1
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 4.4e-36 154.5 88 80.7
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 5.7e-36 154.1 93 79.6
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 7.5e-36 153.7 94 76.6
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 7.5e-36 153.7 94 76.6
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 9.8e-36 153.3 96 75.0
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 9.8e-36 153.3 96 77.1
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.3e-35 152.9 93 76.3
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 2.2e-35 152.1 92 77.2
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.2e-35 152.1 95 74.7
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 2.8e-35 151.8 96 77.1
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 2.8e-35 151.8 99 71.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 4.9e-35 151.0 95 74.7
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 4.9e-35 151.0 99 70.7
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 6.3e-35 150.6 100 73.0
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 2.4e-34 148.7 91 78.0
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 2.4e-34 148.7 79 86.1
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 4.1e-34 147.9 82 84.1
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 5.4e-34 147.5 85 81.2
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 7.0e-34 147.1 79 84.8
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 9.2e-34 146.7 93 77.4
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.6e-33 146.0 96 69.8
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.5e-33 144.8 96 68.8
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.5e-33 144.8 96 68.8
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 3.5e-33 144.8 91 76.9
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 3.5e-33 144.8 96 68.8
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 7.8e-33 143.7 88 78.4
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.7e-32 142.5 96 67.7
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 2.3e-32 142.1 96 67.7
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.3e-32 142.1 91 73.6
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 3.8e-32 141.4 97 67.0
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 3.8e-32 141.4 97 67.0
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 5.0e-32 141.0 96 67.7
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 5.0e-32 141.0 94 68.1
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 5.0e-32 141.0 94 68.1
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 5.0e-32 141.0 95 69.5
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 6.6e-32 140.6 91 71.4
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 6.6e-32 140.6 94 68.1
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.5e-31 139.4 99 68.7
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 2.5e-31 138.7 89 71.9
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.4e-29 132.9 86 68.6
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.4e-29 132.9 86 68.6
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 5.2e-29 131.0 88 67.0
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-28 129.0 66 86.4
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 5.7e-28 127.5 68 85.3
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 1.3e-27 126.3 87 64.4
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.3e-27 126.3 66 86.4
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 2.2e-27 125.6 85 64.7
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 3.7e-27 124.8 66 81.8
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 8.3e-27 123.6 93 60.2
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 1.1e-26 123.2 78 71.8
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.4e-26 122.9 91 69.2
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 5.4e-26 120.9 85 64.7
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 5.9e-25 117.5 72 75.0
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.3e-24 116.3 87 59.8
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 1.7e-24 115.9 63 82.5
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 1.9e-23 112.5 66 75.8
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 2.5e-23 112.1 78 65.4
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 4.3e-23 111.3 63 81.0
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 5.6e-23 110.9 62 82.3
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.1e-22 109.0 82 63.4
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 1.1e-21 106.7 67 74.6
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 3.1e-21 105.1 77 61.0
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 6.8e-21 104.0 86 54.7
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.4e-20 101.3 53 81.1
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 6.4e-19 97.4 59 74.6
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 1.9e-18 95.9 63 65.1
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 2.4e-18 95.5 65 70.8
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 4.1e-18 94.7 59 76.3
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 5.4e-18 94.4 64 64.1
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.9e-15 85.9 63 65.1
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 2.5e-15 85.5 83 51.8
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 4.7e-14 81.3 82 48.8
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 4.7e-14 81.3 55 67.3
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 6.2e-14 80.9 80 53.8
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 1.1e-13 80.1 82 46.3
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 2.9e-11 72.0 33 90.9
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 1.7e-08 62.8 59 45.8
QL05p020893 Quercus lobata HOM05D006052 ORTHO05D007319 2.1e-06 55.8 88 43.2


User provided reference genes

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