Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 2243.4 1160 100.0
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1855.1 1160 82.9
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1701.0 1161 76.7
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1624.8 1161 73.2
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1578.9 1134 72.9
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 0.0e+00 1516.9 1075 74.0
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1417.1 1164 64.8
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1416.7 1159 65.2
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1403.7 1051 71.5
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1383.6 1236 61.2
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1381.7 1163 63.6
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1374.0 1164 62.5
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1367.1 1178 63.2
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1348.6 1161 62.0
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1331.2 1165 61.5
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1322.8 1160 60.4
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1309.7 1166 60.3
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1302.0 1160 59.9
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1299.3 1165 60.2
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1295.8 1163 60.2
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1288.9 963 70.4
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1285.0 1163 59.7
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1281.2 1166 59.7
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1268.8 1170 58.3
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1258.0 1170 57.9
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1246.1 1164 55.8
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1245.0 1226 54.7
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1243.0 1165 57.8
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1234.6 1163 56.7
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1232.2 1162 57.4
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1228.4 1161 57.3
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1227.6 1162 55.6
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1223.0 1165 56.6
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1220.3 1163 56.7
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1218.8 1162 56.1
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1208.7 1163 55.4
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1206.8 1158 56.7
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1205.7 1162 55.7
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1199.1 1163 55.5
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1196.0 1160 56.0
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1187.9 1163 54.9
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 1169.5 1123 56.5
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1167.5 1124 56.5
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1159.4 1161 55.7
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1157.1 1156 53.9
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1155.6 1155 54.4
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 0.0e+00 1136.7 1115 54.9
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1133.2 1164 52.7
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1131.3 1163 52.5
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1102.0 1161 52.0
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1098.2 1159 51.6
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 0.0e+00 1097.4 1164 51.7
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1097.4 1161 51.9
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 1097.0 1159 51.7
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 1089.7 1166 50.4
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1085.9 1169 51.4
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 0.0e+00 1083.6 1169 52.0
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 0.0e+00 1078.5 1171 51.5
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.6e-311 1073.2 1030 55.0
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 6.0e-310 1067.8 1238 48.8
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.1e-307 1059.3 1142 50.2
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.7e-304 1049.7 1110 52.0
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 1.4e-303 1046.6 1164 49.8
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 2.3e-301 1039.3 1161 48.8
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 1.1e-300 1036.9 1154 49.8
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 7.4e-300 1034.2 1163 48.6
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.3e-299 1033.5 1164 49.0
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 3.4e-297 1025.4 1158 48.8
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 4.6e-294 1015.0 1155 48.8
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 6.7e-293 1011.1 1107 51.8
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 1.9e-292 1009.6 1160 48.9
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 5.6e-292 1008.1 1160 48.3
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 4.8e-291 1005.0 1161 48.8
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 1.2e-289 1000.3 1161 48.7
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.3e-288 996.9 1160 48.3
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.9e-288 995.7 1163 48.2
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 2.5e-287 992.6 1160 47.8
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 4.2e-287 991.9 1163 47.4
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.9e-285 985.3 1162 47.3
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 3.3e-284 982.2 1182 47.2
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.3e-283 980.3 1160 47.5
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 1.4e-279 966.8 1162 46.8
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 2.7e-278 962.6 1090 49.7
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 7.2e-271 937.9 1154 46.7
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 6.7e-269 931.4 1046 49.9
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 3.6e-262 909.1 943 53.7
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 4.7e-262 908.7 1155 44.8
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 6.3e-259 898.3 1080 46.9
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 4.2e-247 859.0 1153 44.5
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.2e-246 857.4 1180 43.1
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 3.6e-246 855.9 1173 43.1
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 6.1e-238 828.6 1164 44.1
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 2.2e-235 820.1 1177 40.1
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 4.7e-222 775.8 948 45.4
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 4.0e-173 613.2 1067 37.9
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 2.1e-145 521.2 1213 32.3
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 7.2e-138 496.1 646 42.7
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.3e-131 475.3 457 57.3
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.7e-131 474.9 756 38.8
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 7.2e-130 469.5 1211 29.4
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.2e-122 443.7 438 53.9
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 4.0e-120 437.2 521 47.8
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 4.4e-119 433.7 532 44.2
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.3e-106 391.0 337 58.8
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.8e-104 385.2 464 48.5
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 3.4e-103 380.9 1158 28.1
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 3.1e-96 357.8 449 47.4
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.5e-87 328.9 233 68.7
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 8.1e-73 280.0 232 62.1
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 4.8e-65 254.2 269 53.2
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.1e-64 251.5 197 65.5
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 2.6e-63 248.4 1307 24.0
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 2.9e-62 245.0 315 48.6
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.5e-58 231.9 347 42.7
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 6.2e-57 227.3 154 66.9
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.4e-53 216.1 176 59.7
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.1e-50 206.5 238 49.6
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 1.4e-45 189.5 184 55.4
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 4.5e-39 167.9 173 49.1
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.0e-38 166.8 118 71.2
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.2e-37 161.8 159 50.3
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.4e-32 146.4 122 59.0
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.1e-29 136.7 134 55.2
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 9.4e-29 133.7 116 56.9
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 1.6e-28 132.9 96 71.9
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 8.0e-28 130.6 120 60.0
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 1.8e-27 129.4 180 43.9
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 2.3e-27 129.0 147 48.3
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 2.3e-27 129.0 147 48.3
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.1e-26 126.7 96 66.7
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.1e-26 126.7 96 66.7
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.7e-26 124.4 121 52.1
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.7e-25 122.9 160 45.0
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 1.8e-24 119.4 93 66.7
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 5.3e-24 117.9 258 33.3
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 1.2e-23 116.7 1274 21.3
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 1.0e-19 103.6 126 46.8
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 4.0e-19 101.7 75 64.0
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 4.1e-16 91.7 64 53.1
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 7.7e-15 87.4 57 66.7
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.0e-14 87.0 143 33.6
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 2.2e-14 85.9 90 45.6
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 2.9e-14 85.5 55 74.5
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 1.5e-13 83.2 106 46.2
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 1.9e-13 82.8 73 61.6
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 8.0e-12 77.4 76 56.6
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 5.2e-11 74.7 92 43.5
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.0e-10 72.8 64 53.1
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 5.7e-10 71.2 68 50.0
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.4e-08 66.6 50 60.0


User provided reference genes

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