Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 4.6e-272 940.6 486 100.0
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 2.2e-189 666.0 495 71.1
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 1.7e-186 656.4 497 70.4
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 4.8e-136 488.8 503 57.9
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 2.9e-133 479.6 516 54.5
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 6.5e-125 451.8 515 52.6
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 1.1e-124 451.1 517 52.4
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 1.2e-121 441.0 519 52.8
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 4.1e-119 432.6 428 57.7
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.5e-118 429.5 503 53.3
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 1.0e-117 427.9 527 50.5
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.3e-117 426.8 503 53.5
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 8.6e-117 424.9 502 54.8
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 3.6e-115 419.5 518 51.0
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 6.1e-115 418.7 516 51.6
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 1.7e-112 410.6 519 50.7
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 3.1e-111 406.4 502 50.4
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 7.0e-111 405.2 501 53.9
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 9.2e-111 404.8 521 49.3
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 2.9e-109 399.8 514 50.6
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.1e-108 397.9 502 50.0
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 2.5e-108 396.7 520 48.8
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.2e-107 394.4 520 48.8
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 4.7e-107 392.5 527 48.0
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 2.0e-105 387.1 512 49.4
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.3e-104 384.4 520 50.2
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 3.7e-104 382.9 520 50.0
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 4.9e-104 382.5 524 47.1
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 3.0e-101 373.2 519 47.8
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.1e-100 371.3 521 47.6
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 1.1e-100 371.3 511 46.2
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.5e-100 370.2 487 50.3
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 9.5e-100 368.2 500 48.0
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 1.2e-99 367.9 524 46.0
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 1.6e-99 367.5 483 48.0
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 3.6e-99 366.3 524 45.8
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 5.4e-95 352.4 525 44.2
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 3.9e-93 346.3 532 45.7
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 4.7e-91 339.3 462 47.6
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 4.4e-89 332.8 529 44.6
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 3.7e-88 329.7 483 44.9
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 1.9e-87 327.4 449 46.5
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 9.2e-87 325.1 558 41.8
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 2.1e-86 323.9 566 41.0
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 6.0e-86 322.4 442 46.2
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 4.3e-84 316.2 411 47.9
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 8.1e-83 312.0 528 43.0
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 2.4e-82 310.5 453 43.7
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 5.2e-82 309.3 527 42.7
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 6.8e-82 308.9 522 42.0
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 2.0e-81 307.4 439 46.5
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 3.4e-81 306.6 452 43.1
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 1.6e-78 297.7 513 42.5
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 4.6e-78 296.2 446 43.7
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 4.6e-78 296.2 446 43.7
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 6.0e-78 295.8 443 42.2
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 7.8e-78 295.4 513 40.9
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 3.0e-77 293.5 510 41.0
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 6.6e-77 292.4 517 39.7
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 1.9e-76 290.8 540 39.6
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 3.3e-76 290.0 513 40.5
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 1.6e-75 287.7 484 41.5
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 1.1e-74 285.0 503 41.9
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 6.9e-74 282.3 489 39.9
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 2.6e-73 280.4 427 43.1
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 8.4e-72 275.4 510 38.4
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 1.6e-70 271.2 440 41.8
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 5.6e-68 262.7 517 38.1
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 9.6e-68 261.9 517 36.2
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 9.6e-68 261.9 434 42.4
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 3.6e-67 260.0 483 39.1
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 4.0e-66 256.5 470 40.9
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 6.9e-66 255.8 428 41.6
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 5.8e-65 252.7 518 37.3
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 9.9e-65 251.9 513 37.8
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 1.0e-61 241.9 422 41.2
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 1.0e-61 241.9 510 36.5
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 5.1e-61 239.6 515 35.9
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 2.5e-60 237.3 459 37.3
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 2.8e-59 233.8 508 35.8
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.8e-59 233.8 381 42.3
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 1.1e-58 231.9 560 35.0
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 6.9e-58 229.2 474 37.3
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 1.5e-57 228.0 522 34.1
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 3.4e-57 226.9 517 36.0
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 5.8e-57 226.1 560 34.8
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 1.3e-56 224.9 453 37.3
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 1.9e-55 221.1 453 36.9
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 4.2e-55 219.9 463 35.9
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 5.5e-55 219.5 510 35.5
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 6.0e-54 216.1 462 35.9
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 1.5e-52 211.5 457 35.2
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 9.6e-52 208.8 466 35.2
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 1.3e-51 208.4 493 36.3
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 5.3e-50 203.0 468 35.5
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 1.5e-49 201.4 455 36.3
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.0e-49 201.1 433 36.0
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 1.3e-48 198.4 445 34.8
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 1.3e-48 198.4 445 34.8
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 1.3e-48 198.4 445 34.8
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.7e-48 198.0 476 34.9
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.7e-48 198.0 476 34.9
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 2.9e-48 197.2 473 35.5
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 1.9e-47 194.5 244 49.6
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 3.7e-35 153.7 261 39.5
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 3.1e-34 150.6 343 35.9
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 3.1e-34 150.6 482 29.7
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 6.5e-32 142.9 285 36.8
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 4.5e-25 120.2 361 31.9
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.1e-20 105.5 214 35.5
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 9.1e-18 95.9 143 42.0
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 3.2e-15 87.4 146 36.3
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 1.2e-12 79.0 276 29.3
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.4e-10 71.2 80 46.2
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 7.7e-09 66.2 484 23.8
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 2.7e-06 57.8 129 32.6


User provided reference genes

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