Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 4.4e-40 167.5 87 100.0
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 3.1e-33 144.8 96 83.3
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.9e-31 138.3 96 77.1
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 3.7e-31 137.9 96 78.1
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 8.3e-31 136.7 96 77.1
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 2.1e-29 132.1 96 74.0
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 3.5e-29 131.3 95 73.7
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 1.0e-28 129.8 75 88.0
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 1.7e-28 129.0 96 71.9
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 2.3e-28 128.6 96 76.0
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 2.3e-28 128.6 96 76.0
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 3.0e-28 128.3 92 75.0
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 3.9e-28 127.9 95 72.6
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 5.1e-28 127.5 95 73.7
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 8.6e-28 126.7 95 70.5
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.1e-27 126.3 95 72.6
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.1e-27 126.3 95 72.6
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.1e-27 126.3 95 72.6
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 1.5e-27 125.9 96 70.8
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.9e-27 125.6 96 74.0
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 2.5e-27 125.2 96 74.0
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 3.3e-27 124.8 96 70.8
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 4.3e-27 124.4 96 70.8
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 4.3e-27 124.4 96 69.8
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 5.6e-27 124.0 96 71.9
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 7.3e-27 123.6 96 72.9
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 7.3e-27 123.6 77 84.4
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 9.5e-27 123.2 74 83.8
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 9.5e-27 123.2 96 69.8
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 9.5e-27 123.2 96 70.8
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 4.7e-26 120.9 96 67.7
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 8.1e-26 120.2 93 68.8
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 8.1e-26 120.2 74 82.4
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.1e-25 119.8 73 84.9
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 2.3e-25 118.6 96 69.8
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 2.3e-25 118.6 93 67.7
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 3.1e-25 118.2 74 83.8
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 5.2e-25 117.5 74 78.4
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 5.2e-25 117.5 82 72.0
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 6.8e-25 117.1 74 78.4
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 8.9e-25 116.7 74 78.4
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 8.9e-25 116.7 74 78.4
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 1.2e-24 116.3 73 78.1
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 1.2e-24 116.3 74 75.7
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.2e-24 116.3 73 79.5
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 1.2e-24 116.3 74 79.7
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.2e-24 116.3 96 68.8
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 1.5e-24 115.9 74 81.1
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.5e-24 115.9 96 67.7
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.5e-24 115.9 74 79.7
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.5e-24 115.9 74 79.7
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.5e-24 115.9 74 75.7
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 1.5e-24 115.9 74 77.0
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 2.0e-24 115.5 73 82.2
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.0e-24 115.5 74 77.0
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 2.6e-24 115.2 74 79.7
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 2.6e-24 115.2 96 66.7
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 3.4e-24 114.8 74 79.7
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 4.4e-24 114.4 74 75.7
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 4.4e-24 114.4 74 75.7
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 4.4e-24 114.4 74 75.7
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 4.4e-24 114.4 96 66.7
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 5.8e-24 114.0 74 79.7
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 5.8e-24 114.0 74 81.1
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 7.5e-24 113.6 82 69.5
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 7.5e-24 113.6 96 63.5
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 9.9e-24 113.2 74 78.4
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.3e-23 112.8 74 74.3
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 1.3e-23 112.8 75 78.7
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 1.7e-23 112.5 96 64.6
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.7e-23 112.5 96 64.6
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.7e-23 112.5 95 66.3
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.2e-23 112.1 73 79.5
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 2.2e-23 112.1 96 67.7
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.2e-23 112.1 125 57.6
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.2e-23 112.1 96 64.6
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 2.9e-23 111.7 73 78.1
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.9e-23 111.7 74 71.6
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 4.9e-23 110.9 73 78.1
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 6.4e-23 110.5 74 77.0
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 6.4e-23 110.5 74 77.0
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 6.4e-23 110.5 74 77.0
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 6.4e-23 110.5 74 77.0
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 6.4e-23 110.5 74 77.0
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 6.4e-23 110.5 73 75.3
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 6.4e-23 110.5 96 64.6
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 6.4e-23 110.5 73 79.5
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 8.3e-23 110.2 74 77.0
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 8.3e-23 110.2 92 64.1
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.1e-22 109.8 73 76.7
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 1.1e-22 109.8 74 74.3
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.4e-22 109.4 74 74.3
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.4e-22 109.4 74 75.7
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 1.4e-22 109.4 75 76.0
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 1.9e-22 109.0 74 74.3
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 1.9e-22 109.0 73 75.3
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 2.4e-22 108.6 70 78.6
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 3.2e-22 108.2 79 69.6
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 3.2e-22 108.2 74 75.7
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 4.1e-22 107.8 73 76.7
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 5.4e-22 107.5 77 71.4
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 5.4e-22 107.5 77 71.4
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 7.1e-22 107.1 96 62.5
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 7.1e-22 107.1 96 62.5
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 7.1e-22 107.1 73 72.6
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 1.2e-21 106.3 79 68.4
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 2.1e-21 105.5 73 74.0
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 2.1e-21 105.5 77 70.1
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 2.1e-21 105.5 76 68.4
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.3e-20 102.8 74 67.6
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.7e-20 102.4 74 71.6
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 6.6e-20 100.5 73 68.5
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 1.5e-19 99.4 107 54.2
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 1.5e-19 99.4 86 60.5
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 5.6e-19 97.4 51 92.2
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 2.4e-17 92.0 49 89.8
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 1.5e-16 89.4 85 60.0
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 2.6e-16 88.6 74 59.5
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 3.4e-16 88.2 54 83.3
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 3.4e-16 88.2 75 54.7
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 7.6e-16 87.0 51 84.3
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 1.7e-15 85.9 72 58.3
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 2.2e-15 85.5 51 80.4
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 6.4e-15 84.0 67 62.7
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 3.2e-14 81.6 67 61.2
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 3.3e-11 71.6 74 54.1
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 2.1e-10 68.9 64 54.7
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.2e-08 63.2 48 64.6
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 1.5e-08 62.8 70 50.0
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 3.4e-08 61.6 63 49.2
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 3.4e-08 61.6 47 63.8
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 1.3e-07 59.7 63 46.0
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 7.1e-06 53.9 39 74.4


User provided reference genes

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