Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 2.5e-131 472.2 257 100.0
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.5e-96 356.7 256 76.2
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 1.9e-86 323.2 255 74.1
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 4.6e-85 318.5 254 71.7
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 2.3e-84 316.2 254 71.3
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 5.2e-81 305.1 289 65.1
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 7.5e-80 301.2 250 70.4
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 4.9e-79 298.5 251 68.9
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.2e-77 293.9 256 64.1
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 9.5e-75 284.3 241 68.0
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 4.0e-73 278.9 255 62.4
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 2.0e-72 276.6 260 61.5
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 2.0e-72 276.6 244 64.8
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 2.6e-72 276.2 245 66.1
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 1.3e-71 273.9 255 61.6
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.3e-71 273.9 242 62.8
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.9e-71 272.7 243 64.2
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.1e-70 270.8 246 65.0
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 4.1e-70 268.9 251 64.9
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 7.1e-70 268.1 262 59.9
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 1.6e-69 266.9 235 63.4
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 1.6e-69 266.9 242 62.4
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.6e-69 266.9 236 65.7
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 6.0e-69 265.0 247 62.8
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.8e-69 264.6 239 63.2
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 2.3e-68 263.1 231 65.8
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 2.3e-68 263.1 231 63.2
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.9e-67 260.0 251 62.5
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 3.3e-67 259.2 239 63.6
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 2.8e-66 256.1 240 60.4
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 4.7e-66 255.4 260 57.3
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 4.7e-66 255.4 251 61.0
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 6.2e-66 255.0 242 62.8
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 1.8e-65 253.4 238 60.5
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.4e-65 253.1 242 59.1
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 3.1e-65 252.7 239 59.8
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 3.1e-65 252.7 239 59.8
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.0e-65 252.3 240 59.6
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 5.2e-65 251.9 251 61.0
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 2.0e-64 250.0 232 60.3
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 5.8e-64 248.4 254 59.4
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 7.6e-64 248.1 258 57.8
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 7.6e-64 248.1 230 60.0
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 7.6e-64 248.1 236 59.7
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 7.6e-64 248.1 242 58.7
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 7.6e-64 248.1 249 57.8
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 9.9e-64 247.7 232 60.3
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 9.9e-64 247.7 232 60.3
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 9.9e-64 247.7 232 60.3
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.3e-63 247.3 259 56.0
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.7e-63 246.9 253 60.1
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 2.9e-63 246.1 236 61.4
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 3.8e-63 245.7 232 60.3
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 4.9e-63 245.4 249 56.2
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.9e-63 245.4 235 60.9
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 8.4e-63 244.6 249 56.6
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.1e-62 244.2 255 58.4
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 1.4e-62 243.8 241 59.8
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.9e-62 243.4 252 56.7
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.9e-62 243.4 252 58.7
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 3.2e-62 242.7 219 63.5
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 3.2e-62 242.7 243 58.8
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 3.2e-62 242.7 237 59.9
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 4.2e-62 242.3 208 65.9
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 5.4e-62 241.9 222 60.8
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 9.3e-62 241.1 233 58.8
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.6e-61 240.4 230 59.6
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 2.1e-61 240.0 233 58.4
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 2.1e-61 240.0 250 57.2
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 4.6e-61 238.8 224 60.7
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 4.6e-61 238.8 225 58.7
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 6.0e-61 238.4 249 57.0
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.0e-60 237.7 230 60.9
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.7e-60 236.9 160 73.1
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.7e-60 236.9 235 58.3
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 3.0e-60 236.1 251 57.8
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 6.6e-60 235.0 217 60.4
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 8.7e-60 234.6 221 60.2
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 1.5e-59 233.8 249 56.2
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 1.5e-59 233.8 249 56.2
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 1.9e-59 233.4 241 58.1
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 3.3e-59 232.6 230 58.3
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 3.3e-59 232.6 213 64.3
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 3.3e-59 232.6 250 57.6
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 4.3e-59 232.3 274 52.2
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 5.6e-59 231.9 157 73.9
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 2.1e-58 229.9 240 59.2
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 3.6e-58 229.2 226 59.3
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 2.4e-57 226.5 242 55.0
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 3.1e-57 226.1 242 55.8
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 5.3e-57 225.3 248 54.0
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 9.9e-56 221.1 242 55.4
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.3e-55 220.7 302 50.3
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 1.9e-54 216.9 231 53.7
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 5.4e-54 215.3 253 51.4
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 1.2e-53 214.2 246 53.7
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.2e-53 214.2 247 54.7
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 1.6e-53 213.8 215 55.3
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 1.9e-51 206.8 226 59.7
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.6e-50 203.8 180 58.9
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 6.2e-50 201.8 180 58.3
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 1.1e-49 201.1 211 52.1
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 9.0e-49 198.0 129 73.6
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 1.5e-48 197.2 159 66.0
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 2.3e-44 183.3 244 50.4
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.1e-43 181.0 157 61.1
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.4e-41 174.1 183 54.6
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 4.0e-41 172.6 229 48.5
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 2.0e-40 170.2 130 65.4
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 4.5e-40 169.1 152 56.6
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.3e-39 167.5 167 57.5
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 6.5e-39 165.2 186 50.0
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.4e-38 164.1 159 59.1
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 2.3e-36 156.8 126 61.9
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 1.1e-35 154.5 124 63.7
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 1.9e-35 153.7 179 50.3
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.1e-34 150.2 95 84.2
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 9.0e-33 144.8 244 39.3
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 3.4e-32 142.9 144 56.2
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 5.5e-30 135.6 95 71.6
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.1e-27 127.9 173 47.4
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 1.1e-25 121.3 78 74.4
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 2.9e-23 113.2 137 55.5
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 2.2e-18 97.1 73 69.9
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 1.4e-17 94.4 116 42.2
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.4e-17 94.4 67 67.2
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.3e-15 87.8 55 74.5
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 3.9e-12 76.3 126 44.4
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.5e-11 74.3 108 43.5
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 1.5e-11 74.3 143 37.1
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.2e-08 64.7 129 28.7


User provided reference genes

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