Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 9.2e-240 833.2 428 100.0
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 8.2e-156 554.3 440 66.4
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.6e-133 479.6 436 58.0
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 2.6e-133 479.6 435 57.7
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.6e-130 470.3 399 59.9
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.6e-129 464.9 437 57.0
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.6e-129 464.5 437 57.0
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.5e-128 463.8 437 56.5
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 5.6e-128 461.8 437 57.0
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-126 457.2 428 56.8
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.4e-123 446.4 473 53.5
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 7.0e-123 444.9 403 57.1
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 7.0e-123 444.9 437 55.6
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 4.6e-122 442.2 425 55.8
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 3.0e-121 439.5 400 57.2
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 6.2e-119 431.8 348 64.9
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 1.2e-117 427.6 398 55.0
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 1.2e-117 427.6 393 57.0
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 3.4e-117 426.0 475 50.5
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 6.4e-116 421.8 394 56.9
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 1.1e-115 421.0 399 56.6
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 2.7e-114 416.4 438 50.5
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 1.7e-113 413.7 430 54.9
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 3.9e-113 412.5 392 54.1
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 1.5e-112 410.6 398 54.3
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 3.3e-112 409.5 387 54.8
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 6.2e-111 405.2 413 52.3
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.1e-110 404.4 390 54.6
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 1.1e-110 404.4 354 59.6
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 4.0e-110 402.5 420 52.1
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.5e-109 400.6 430 51.9
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.5e-109 400.6 420 51.7
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 2.0e-109 400.2 394 54.8
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 2.6e-109 399.8 390 54.6
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 3.4e-109 399.4 404 53.0
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 7.5e-109 398.3 399 52.1
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.3e-108 397.5 389 53.0
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 6.4e-108 395.2 410 52.4
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 8.3e-108 394.8 450 50.7
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 8.3e-108 394.8 402 54.2
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 8.3e-108 394.8 395 52.9
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 2.4e-107 393.3 412 51.9
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 4.6e-106 389.0 428 48.8
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 6.0e-106 388.7 393 50.9
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.7e-105 387.1 424 48.6
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.7e-105 387.1 396 52.0
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 3.9e-105 386.0 391 53.7
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 8.6e-105 384.8 394 50.8
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.2e-103 380.9 392 51.0
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 2.1e-103 380.2 409 51.6
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 3.6e-103 379.4 390 51.5
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.4e-102 377.5 440 47.3
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 2.4e-102 376.7 440 47.5
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 2.4e-102 376.7 428 48.1
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 2.4e-102 376.7 433 47.6
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 3.1e-102 376.3 390 51.5
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 4.0e-102 375.9 388 52.1
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 5.2e-102 375.6 408 50.0
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 2.0e-101 373.6 396 50.8
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 4.4e-101 372.5 393 50.1
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 4.4e-101 372.5 399 50.1
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 5.8e-101 372.1 393 48.9
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 9.9e-101 371.3 440 46.8
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.3e-100 370.9 418 47.8
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 1.3e-100 370.9 393 49.1
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.9e-100 369.8 400 50.8
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 1.1e-99 367.9 396 50.0
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 2.4e-99 366.7 427 46.1
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 3.2e-99 366.3 396 49.7
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 9.2e-99 364.8 349 54.2
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 4.6e-98 362.5 403 48.4
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 6.0e-98 362.1 400 49.5
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 6.0e-98 362.1 408 49.0
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 7.8e-98 361.7 395 49.1
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.0e-97 361.3 433 45.7
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 2.3e-97 360.1 392 50.8
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 4.0e-94 349.4 392 48.2
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 6.9e-94 348.6 421 46.8
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 1.2e-93 347.8 315 56.8
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 2.0e-93 347.1 398 46.2
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 5.8e-93 345.5 408 46.8
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 7.6e-93 345.1 394 45.9
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 2.2e-92 343.6 652 36.5
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 1.1e-91 341.3 393 47.6
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.2e-91 339.7 408 43.6
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.2e-90 337.8 415 43.6
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.2e-90 337.8 420 43.6
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 3.0e-89 333.2 395 45.3
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 8.7e-89 331.6 485 42.3
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.3e-87 327.8 417 43.6
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.1e-86 324.7 408 44.9
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 4.0e-86 322.8 396 45.7
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 5.3e-86 322.4 439 41.5
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 9.0e-86 321.6 434 40.3
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-84 317.8 385 47.5
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.9e-83 313.9 399 44.6
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 7.1e-83 312.0 398 43.0
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 7.1e-83 312.0 394 43.4
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 9.3e-83 311.6 394 43.4
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 4.6e-82 309.3 397 43.1
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 4.6e-82 309.3 397 43.1
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 4.6e-82 309.3 397 43.1
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.8e-81 307.4 405 45.2
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 8.7e-81 305.1 403 41.7
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 5.6e-80 302.4 405 43.2
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 9.6e-80 301.6 403 43.7
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 4.8e-79 299.3 402 42.8
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 6.2e-79 298.9 395 41.5
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.0e-76 291.6 299 53.2
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 1.0e-76 291.6 411 43.3
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 2.5e-75 287.0 401 41.9
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 3.4e-69 266.5 383 40.7
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 3.4e-69 266.5 390 40.8
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 5.5e-67 259.2 247 54.3
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.8e-62 244.2 446 36.3
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 2.0e-61 240.7 221 54.3
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 2.0e-61 240.7 406 38.2
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.5e-59 233.8 281 46.3
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.2e-53 214.9 376 39.1
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 1.9e-51 207.6 376 37.0
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 4.7e-50 203.0 395 35.4
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 3.0e-49 200.3 229 49.3
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.9e-49 199.9 240 47.9
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.7e-47 194.5 313 39.3
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 1.4e-46 191.4 401 36.2
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.7e-42 177.2 236 40.7
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 8.8e-41 172.2 401 34.4
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 4.4e-40 169.9 461 29.9
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 5.7e-40 169.5 402 34.3
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.4e-40 169.1 396 33.1
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 1.7e-39 167.9 451 29.7
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.6e-37 160.6 236 39.8
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.6e-37 160.6 257 39.3
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 9.4e-35 152.1 137 59.1
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.2e-34 151.8 316 34.5
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.4e-33 148.3 262 35.5
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 6.5e-28 129.4 244 39.8
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 4.0e-25 120.2 109 52.3
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 8.8e-25 119.0 340 28.5
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 4.1e-22 110.2 173 38.2
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 9.1e-22 109.0 106 52.8
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.5e-21 107.1 164 40.2
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 7.7e-21 105.9 158 41.1
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 1.3e-20 105.1 450 25.3
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.7e-20 104.8 166 37.3
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.7e-20 104.8 112 53.6
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.6e-16 90.9 153 35.9
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.4e-14 83.2 128 38.3
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 1.7e-12 78.2 131 36.6
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 9.5e-11 72.4 97 37.1
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 1.6e-10 71.6 89 44.9
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 2.3e-09 67.8 110 35.5
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 2.3e-09 67.8 110 35.5
FAN14G1374 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.9e-09 65.9 150 35.3
Ca_02098_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 5.8e-08 63.2 184 28.8
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 1.1e-06 58.9 139 34.5
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 2.4e-06 57.8 123 36.6
ATR0589G117 Amborella trichopoda HOM05D004436 ORTHO05D005179 9.2e-06 55.8 81 38.3


User provided reference genes

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