Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1919.8 990 100.0
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1805.4 990 93.1
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1795.4 990 92.3
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1772.3 990 90.9
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1757.3 990 89.8
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1753.8 990 89.8
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1635.2 990 83.3
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1613.6 918 89.0
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1605.5 990 83.4
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1594.3 990 82.1
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1588.9 990 81.6
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1581.2 990 80.7
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1580.1 993 80.9
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1570.4 992 80.4
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1569.7 993 80.7
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1567.4 969 82.5
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1553.1 990 78.8
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1552.7 990 78.9
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1552.3 990 78.1
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1552.3 991 78.1
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1549.6 991 79.2
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1549.3 1004 78.7
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1548.9 990 79.9
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1548.1 991 77.9
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1546.2 979 78.5
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1545.4 991 79.5
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1544.3 979 78.0
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1541.9 991 78.6
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1539.2 990 79.9
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1535.8 1015 78.4
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1533.9 990 77.9
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1532.3 990 80.1
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1526.9 990 78.9
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1521.9 991 77.7
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1520.0 991 78.2
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1512.7 992 78.0
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1511.1 987 76.5
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1510.4 1074 72.2
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1509.2 992 77.8
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1508.4 990 77.0
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1507.3 991 76.6
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1506.9 991 77.4
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1506.5 990 77.5
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1506.1 995 76.3
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1501.1 990 76.4
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1499.6 991 75.7
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1498.0 990 75.9
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1497.6 992 76.2
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1496.1 969 78.4
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1495.3 990 76.0
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1494.2 990 77.3
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1491.9 990 75.7
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1491.5 985 76.6
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1488.8 990 77.1
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1484.2 994 76.2
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1479.2 990 75.2
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1475.3 990 75.7
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1471.8 993 75.1
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1469.1 990 76.7
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1466.4 992 75.4
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1465.3 993 75.1
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1464.9 992 75.7
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1461.0 990 74.8
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1460.7 991 76.6
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1456.0 960 75.5
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1454.9 963 76.1
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1453.3 992 75.3
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 991 73.8
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1448.0 990 74.0
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1447.6 993 74.9
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1445.6 997 75.7
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1444.5 995 73.3
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1442.6 962 76.8
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1441.4 993 74.5
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1428.3 992 74.7
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1426.0 990 73.3
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1420.2 992 72.9
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1416.0 990 72.4
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1411.7 990 72.9
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1408.3 962 75.3
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1406.3 985 73.1
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1405.2 897 78.9
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1404.4 993 73.7
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1403.7 995 72.8
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1399.4 993 73.1
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1390.9 1025 70.8
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1387.1 1004 70.8
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1379.8 993 71.3
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1379.0 993 71.2
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1377.1 980 71.4
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1377.1 980 71.4
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1374.8 992 71.3
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1367.8 993 71.2
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1355.9 992 70.3
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1354.0 998 70.1
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1351.7 990 70.2
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1319.7 939 72.5
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1309.7 971 68.3
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1295.4 963 69.1
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1231.9 858 74.8
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1231.5 912 71.5
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1211.4 991 61.7
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1173.7 998 62.8
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1113.6 724 79.6
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 1.1e-304 1050.0 992 55.0
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 1.1e-304 1050.0 912 62.5
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 5.5e-304 1047.7 607 87.3
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 5.0e-289 998.0 1000 53.3
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 5.0e-289 998.0 1000 53.5
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 2.7e-287 992.3 1001 51.4
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 9.7e-285 983.8 995 51.5
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 2.5e-280 969.1 1000 52.2
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.2e-280 968.8 611 80.0
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 6.3e-276 954.5 598 80.4
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 7.2e-272 941.0 842 60.0
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.2e-258 897.1 743 62.2
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 4.0e-254 882.1 985 48.0
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 2.0e-245 853.2 807 54.5
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 2.5e-216 756.5 1082 39.6
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 1.6e-207 727.2 911 43.1
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 3.0e-185 653.3 427 77.3
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 2.5e-147 527.3 315 81.6
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 1.8e-145 521.2 304 83.6
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 1.3e-143 515.0 356 72.2
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 8.9e-121 439.1 1193 29.0
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.2e-93 349.0 264 66.7
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.2e-93 349.0 264 66.7
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 7.2e-78 296.6 1077 26.8
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 8.5e-55 219.9 240 49.6
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 1.9e-46 192.2 932 23.5
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 2.7e-32 145.2 122 65.6
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 1.6e-29 136.0 145 51.7
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 1.8e-25 122.5 144 49.3
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 1.0e-23 116.7 109 54.1
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 1.1e-22 113.2 85 67.1
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.7e-15 89.4 64 67.2
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 5.1e-07 61.2 49 57.1
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 1.5e-06 59.7 45 73.3
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 1.5e-06 59.7 45 73.3
Pp3c1_21110 Physcomitrium patens HOM05D002636 ORTHO05D003490 4.3e-06 58.2 723 20.2
Pp3c1_21114 Physcomitrium patens HOM05D002636 ORTHO05D003490 4.3e-06 58.2 723 20.2


User provided reference genes

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