Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G035600 Prunus persica HOM05D001383 ORTHO05D000309 3.0e-25 117.5 50 100.0
Prupe.7G055500 Prunus persica HOM05D001383 ORTHO05D000309 8.8e-17 89.4 49 73.5
Prupe.8G093700 Prunus persica HOM05D001383 ORTHO05D000309 1.1e-16 89.0 49 73.5
Prupe.5G025800 Prunus persica HOM05D001383 ORTHO05D000309 4.3e-16 87.0 50 72.0
SGA_v2.0_scaffold14G06948 Striga asiatica HOM05D001383 ORTHO05D000309 1.4e-09 65.5 49 55.1
DCAR_026902 Daucus carota HOM05D001383 ORTHO05D000309 3.9e-09 63.9 51 54.9
vmacro21229 Vaccinium macrocarpon HOM05D001383 ORTHO05D000309 3.9e-09 63.9 49 55.1
Rhsim01G0020400 Rhododendron simsii HOM05D001383 ORTHO05D000309 6.7e-09 63.2 47 53.2
DCAR_015783 Daucus carota HOM05D001383 ORTHO05D000309 8.8e-09 62.8 50 56.0
SGA_v2.0_scaffold309G48181 Striga asiatica HOM05D001383 ORTHO05D000309 8.8e-09 62.8 50 52.0
SGA_v2.0_scaffold55G19721 Striga asiatica HOM05D001383 ORTHO05D000309 8.8e-09 62.8 50 52.0
SGA_v2.0_scaffold5G03007 Striga asiatica HOM05D001383 ORTHO05D000309 8.8e-09 62.8 50 52.0
Actinidia16536 Actinidia chinensis HOM05D001383 ORTHO05D000309 1.1e-08 62.4 49 53.1
DCAR_015227 Daucus carota HOM05D001383 ORTHO05D000309 1.1e-08 62.4 51 49.0
vmacro15909 Vaccinium macrocarpon HOM05D001383 ORTHO05D000309 1.1e-08 62.4 49 55.1
DCAR_028616 Daucus carota HOM05D001383 ORTHO05D000309 1.5e-08 62.0 51 54.9
Dinv09832 Davidia involucrata HOM05D001383 ORTHO05D000309 1.5e-08 62.0 47 53.2
Hma1.2p1_0540F.1_g174690 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.5e-08 62.0 49 55.1
Hma1.2p1_0717F.1_g208200 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.5e-08 62.0 49 55.1
SGA_v2.0_scaffold185G40087 Striga asiatica HOM05D001383 ORTHO05D000309 1.5e-08 62.0 47 55.3
SGA_v2.0_scaffold310G48213 Striga asiatica HOM05D001383 ORTHO05D000309 2.6e-08 61.2 47 53.2
vmacro20312 Vaccinium macrocarpon HOM05D001383 ORTHO05D000309 2.6e-08 61.2 49 51.0
DCAR_027645 Daucus carota HOM05D001383 ORTHO05D000309 3.3e-08 60.8 51 47.1
Dinv05615 Davidia involucrata HOM05D001383 ORTHO05D000309 3.3e-08 60.8 47 57.4
QL09p043658 Quercus lobata HOM05D001383 ORTHO05D000309 4.4e-08 60.5 45 46.7
Hma1.2p1_0896F.1_g233840 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.7e-08 60.1 49 53.1
DCAR_000974 Daucus carota HOM05D001383 ORTHO05D000309 7.4e-08 59.7 51 52.9
DCAR_023922 Daucus carota HOM05D001383 ORTHO05D000309 7.4e-08 59.7 51 52.9
SGA_v2.0_scaffold1G00312 Striga asiatica HOM05D001383 ORTHO05D000309 7.4e-08 59.7 50 50.0
vmacro12616 Vaccinium macrocarpon HOM05D001383 ORTHO05D000309 7.4e-08 59.7 49 53.1
Medtr2g008290 Medicago truncatula HOM05D001383 ORTHO05D000309 9.7e-08 59.3 49 53.1
Medtr5g021030 Medicago truncatula HOM05D001383 ORTHO05D000309 9.7e-08 59.3 49 53.1
Hma1.2p1_1481F.1_g286180 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.3e-07 58.9 49 55.1
Hma1.2p1_1707F.1_g298530 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.3e-07 58.9 49 55.1
SGA_v2.0_scaffold148G36478 Striga asiatica HOM05D001383 ORTHO05D000309 1.3e-07 58.9 47 53.2
SGA_v2.0_scaffold268G46210 Striga asiatica HOM05D001383 ORTHO05D000309 1.3e-07 58.9 47 53.2
DCAR_031437 Daucus carota HOM05D001383 ORTHO05D000309 1.7e-07 58.5 51 51.0
Hma1.2p1_0283F.1_g113490 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.7e-07 58.5 47 48.9
Hma1.2p1_0785F.1_g217480 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.7e-07 58.5 45 53.3
Hma1.2p1_0787F.1_g217983 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.7e-07 58.5 49 53.1
QL06p049616 Quercus lobata HOM05D001383 ORTHO05D000309 1.7e-07 58.5 45 44.4
SGA_v2.0_scaffold18G08221 Striga asiatica HOM05D012189 ORTHO05D000309 1.7e-07 58.5 49 46.9
SGA_v2.0_scaffold88G27215 Striga asiatica HOM05D001383 ORTHO05D000309 1.7e-07 58.5 50 50.0
Hma1.2p1_1094F.1_g256460 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.2e-07 58.2 47 48.9
Hma1.2p1_1098F.1_g256770 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.2e-07 58.2 43 53.5
Lsat_1_v5_gn_6_80580 Lactuca sativa HOM05D001383 ORTHO05D000309 2.2e-07 58.2 47 53.2
SalBow3G1668 Salvia bowleyana HOM05D008544 ORTHO05D010680 2.2e-07 58.2 47 55.3
PGSC0003DMG400007751 Solanum tuberosum HOM05D008741 ORTHO05D010787 2.2e-07 58.2 49 49.0
SGA_v2.0_scaffold59G20728 Striga asiatica HOM05D001383 ORTHO05D000309 2.2e-07 58.2 47 51.1
Hma1.2p1_0230F.1_g097240 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 2.8e-07 57.8 47 51.1
Atru.chr1.3458 Acer truncatum HOM05D001383 ORTHO05D000309 3.7e-07 57.4 47 51.1
DCAR_029331 Daucus carota HOM05D001383 ORTHO05D000309 3.7e-07 57.4 51 49.0
DCAR_031528 Daucus carota HOM05D001383 ORTHO05D000309 3.7e-07 57.4 47 55.3
Lsat_1_v5_gn_0_6841 Lactuca sativa HOM05D001383 ORTHO05D000309 3.7e-07 57.4 49 51.0
Medtr1g070405 Medicago truncatula HOM05D001383 ORTHO05D000309 3.7e-07 57.4 49 51.0
Medtr3g045410 Medicago truncatula HOM05D001383 ORTHO05D000309 3.7e-07 57.4 49 49.0
Oeu017282.1 Olea europaea HOM05D001383 ORTHO05D000309 3.7e-07 57.4 49 55.1
SGA_v2.0_scaffold14G07112 Striga asiatica HOM05D001383 ORTHO05D000309 3.7e-07 57.4 48 52.1
vmacro20243 Vaccinium macrocarpon HOM05D001383 ORTHO05D000309 3.7e-07 57.4 49 49.0
CANSAT56G3744 Cannabis sativa HOM05D001383 ORTHO05D000309 4.8e-07 57.0 49 49.0
CANSAT80G1681 Cannabis sativa HOM05D001383 ORTHO05D000309 4.8e-07 57.0 49 49.0
Dinv24546 Davidia involucrata HOM05D001383 ORTHO05D000309 4.8e-07 57.0 47 55.3
Gorai.008G075500 Gossypium raimondii HOM05D001383 ORTHO05D000309 4.8e-07 57.0 47 51.1
PGSC0003DMG400046449 Solanum tuberosum HOM05D008741 ORTHO05D010787 4.8e-07 57.0 48 50.0
SGA_v2.0_scaffold179G39548 Striga asiatica HOM05D001383 ORTHO05D000309 4.8e-07 57.0 47 51.1
Hma1.2p1_0012F.1_g007535 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 8.2e-07 56.2 47 51.1
Hma1.2p1_1041F.1_g251030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 8.2e-07 56.2 45 55.6
Hma1.2p1_2672F.1_g326690 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 8.2e-07 56.2 47 55.3
Hma1.2p1_2779F.1_g328290 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 8.2e-07 56.2 48 52.1
PGSC0003DMG400034382 Solanum tuberosum HOM05D008741 ORTHO05D010787 8.2e-07 56.2 48 50.0
PGSC0003DMG400034876 Solanum tuberosum HOM05D008741 ORTHO05D010787 8.2e-07 56.2 48 50.0
PGSC0003DMG400039980 Solanum tuberosum HOM05D008741 ORTHO05D010787 8.2e-07 56.2 48 50.0
PGSC0003DMG400046857 Solanum tuberosum HOM05D008741 ORTHO05D010787 8.2e-07 56.2 48 50.0
vmacro20400 Vaccinium macrocarpon HOM05D001383 ORTHO05D000309 8.2e-07 56.2 51 51.0
CANSAT80G0185 Cannabis sativa HOM05D001383 ORTHO05D000309 1.1e-06 55.8 47 51.1
Hma1.2p1_0013F.1_g009060 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.1e-06 55.8 46 50.0
Hma1.2p1_2631F.1_g325760 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.1e-06 55.8 44 47.7
Gohir.A12G071433 Gossypium hirsutum HOM05D001383 ORTHO05D000309 1.4e-06 55.5 47 53.2
Hma1.2p1_0198F.1_g085550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.4e-06 55.5 47 48.9
SGA_v2.0_scaffold55G19817 Striga asiatica HOM05D001383 ORTHO05D000309 1.4e-06 55.5 49 46.9
arahy.Tifrunner.gnm1.ann1.DG6XDV Arachis hypogaea HOM05D029393 ORTHO05D000309 1.8e-06 55.1 47 51.1
arahy.Tifrunner.gnm1.ann1.QSEK4V Arachis hypogaea HOM05D029393 ORTHO05D000309 1.8e-06 55.1 47 51.1
CAN.G433.7 Capsicum annuum HOM05D008741 ORTHO05D010787 1.8e-06 55.1 49 49.0
Gohir.A10G176350 Gossypium hirsutum HOM05D001383 ORTHO05D000309 1.8e-06 55.1 51 45.1
Gohir.D12G069001 Gossypium hirsutum HOM05D001383 ORTHO05D000309 1.8e-06 55.1 47 48.9
Hma1.2p1_0211F.1_g089820 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.8e-06 55.1 48 52.1
Hma1.2p1_0257F.1_g103490 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.8e-06 55.1 47 46.8
Hma1.2p1_0512F.1_g169330 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.8e-06 55.1 48 52.1
Hma1.2p1_2466F.1_g322651 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 1.8e-06 55.1 46 50.0
Oeu029619.1 Olea europaea HOM05D001383 ORTHO05D000309 1.8e-06 55.1 49 53.1
SGA_v2.0_scaffold121G33159 Striga asiatica HOM05D001383 ORTHO05D000309 1.8e-06 55.1 47 48.9
QL09p032030 Quercus lobata HOM05D001383 ORTHO05D000309 2.4e-06 54.7 45 46.7
SGA_v2.0_scaffold238G43895 Striga asiatica HOM05D001383 ORTHO05D000309 2.4e-06 54.7 46 43.5
Hma1.2p1_0013F.1_g009020 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.1e-06 54.3 46 47.8
Hma1.2p1_0013F.1_g009040 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.1e-06 54.3 46 47.8
Hma1.2p1_0013F.1_g009050 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.1e-06 54.3 46 47.8
Hma1.2p1_0013F.1_g009056 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.1e-06 54.3 46 47.8
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 3.1e-06 54.3 47 48.9
Medtr1g039350 Medicago truncatula HOM05D001383 ORTHO05D000309 3.1e-06 54.3 49 51.0
SGA_v2.0_scaffold364G49972 Striga asiatica HOM05D001383 ORTHO05D000309 3.1e-06 54.3 47 51.1
SGA_v2.0_scaffold45G16985 Striga asiatica HOM05D001383 ORTHO05D000309 3.1e-06 54.3 47 51.1
vmacro00766 Vaccinium macrocarpon HOM05D001383 ORTHO05D000309 3.1e-06 54.3 51 49.0
Hma1.2p1_0048F.1_g028060 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.1e-06 53.9 45 51.1
Hma1.2p1_1389F.1_g280030 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 4.1e-06 53.9 45 51.1
PGSC0003DMG400012467 Solanum tuberosum HOM05D008741 ORTHO05D010787 4.1e-06 53.9 49 49.0
SGA_v2.0_scaffold59G20773 Striga asiatica HOM05D001383 ORTHO05D000309 4.1e-06 53.9 49 46.9
DCAR_023033 Daucus carota HOM05D001383 ORTHO05D000309 5.3e-06 53.5 47 53.2
Hma1.2p1_0012F.1_g007370 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.3e-06 53.5 46 47.8
Hma1.2p1_1902F.1_g307070 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.3e-06 53.5 47 44.7
Nitab4.5_0007977g0060 Nicotiana tabacum HOM05D001383 ORTHO05D000309 5.3e-06 53.5 47 51.1
SGA_v2.0_scaffold174G39284 Striga asiatica HOM05D001383 ORTHO05D000309 5.3e-06 53.5 47 48.9
SGA_v2.0_scaffold54G19529 Striga asiatica HOM05D001383 ORTHO05D000309 5.3e-06 53.5 48 50.0
Gohir.A06G141133 Gossypium hirsutum HOM05D001383 ORTHO05D000309 7.0e-06 53.1 51 43.1
Hma1.2p1_0071F.1_g038200 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 7.0e-06 53.1 48 50.0
Hma1.2p1_0283F.1_g113450 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 7.0e-06 53.1 47 51.1
Hma1.2p1_0289F.1_g114350 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 7.0e-06 53.1 43 51.2
Nitab4.5_0001041g0150 Nicotiana tabacum HOM05D004040 ORTHO05D000309 7.0e-06 53.1 48 47.9
Prupe.8G073400 Prunus persica HOM05D001383 ORTHO05D000309 7.0e-06 53.1 45 53.3
SGA_v2.0_scaffold15G07207 Striga asiatica HOM05D001383 ORTHO05D000309 7.0e-06 53.1 49 46.9
CANSAT25G0977 Cannabis sativa HOM05D001383 ORTHO05D000309 9.1e-06 52.8 49 51.0
Gohir.A13G017966 Gossypium hirsutum HOM05D001383 ORTHO05D000309 9.1e-06 52.8 51 43.1
Hma1.2p1_0172F.1_g075980 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 9.1e-06 52.8 46 45.7
Hma1.2p1_0362F.1_g136570 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 9.1e-06 52.8 47 51.1
Hma1.2p1_1224F.1_g268490 Hydrangea macrophylla HOM05D015331 ORTHO05D000309 9.1e-06 52.8 47 44.7
Nitab4.5_0002145g0050 Nicotiana tabacum HOM05D001383 ORTHO05D000309 9.1e-06 52.8 48 52.1
SalBow8G0778 Salvia bowleyana HOM05D008544 ORTHO05D010680 9.1e-06 52.8 47 48.9
SGA_v2.0_scaffold257G45698 Striga asiatica HOM05D001383 ORTHO05D000309 9.1e-06 52.8 46 43.5


User provided reference genes

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