Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 0.0e+00 1713.7 1015 100.0
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1473.4 1054 82.3
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 0.0e+00 1467.6 1037 83.3
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1276.5 1027 75.2
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 0.0e+00 1267.7 1028 72.4
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1258.4 1028 73.4
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 0.0e+00 1245.3 1028 73.2
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1213.0 1050 67.3
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1200.3 1061 69.9
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 0.0e+00 1189.9 1024 71.1
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1179.5 1026 66.9
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1167.9 1073 64.3
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1155.2 1023 64.9
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1151.7 1021 64.8
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1148.7 1021 64.8
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1136.3 1064 64.2
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1126.3 1025 64.1
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 0.0e+00 1124.8 1047 68.1
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1117.4 1038 63.5
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 0.0e+00 1117.1 1081 65.7
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 0.0e+00 1114.0 1030 66.3
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 0.0e+00 1113.6 1048 64.3
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1112.8 1037 63.5
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1111.3 1035 64.6
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 0.0e+00 1111.3 1038 61.6
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1103.2 1043 63.9
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 0.0e+00 1101.3 1027 62.3
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 0.0e+00 1096.6 1033 61.2
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1095.9 1030 65.9
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1090.9 1025 63.2
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1089.3 1030 65.5
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 0.0e+00 1088.6 1046 63.8
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 0.0e+00 1087.4 941 67.5
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 0.0e+00 1085.9 1047 62.3
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 0.0e+00 1082.8 1052 62.9
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1081.6 1035 63.9
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 4.9e-311 1071.2 1196 57.3
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 4.4e-309 1064.7 1028 63.0
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 9.9e-309 1063.5 1064 64.1
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.3e-308 1063.1 1020 62.5
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 6.4e-308 1060.8 1010 62.2
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.1e-307 1060.1 886 67.7
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 9.3e-307 1057.0 1048 63.2
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 7.8e-306 1053.9 986 64.6
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 6.6e-305 1050.8 902 66.4
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 4.3e-304 1048.1 1005 62.6
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 1.3e-303 1046.6 1046 62.8
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.4e-302 1043.1 1086 56.7
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 1.4e-302 1043.1 1035 62.2
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 2.4e-302 1042.3 1100 61.7
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 2.4e-302 1042.3 1083 59.7
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 8.4e-300 1033.9 996 59.5
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 2.1e-298 1029.2 955 62.7
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 4.6e-298 1028.1 1029 60.8
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 6.0e-298 1027.7 924 64.5
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 3.9e-297 1025.0 951 62.7
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 6.7e-297 1024.2 1042 59.9
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 7.4e-296 1020.8 1060 61.7
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.3e-295 1020.0 920 63.4
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 2.1e-295 1019.2 891 64.3
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 4.8e-295 1018.1 1034 62.0
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.1e-294 1016.9 904 62.7
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 3.4e-293 1011.9 1077 59.9
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.3e-292 1010.0 1017 57.8
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 5.5e-291 1004.6 1024 60.3
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.6e-290 1003.0 1036 60.4
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 6.0e-290 1001.1 1028 58.5
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.8e-289 999.6 931 62.4
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 2.3e-289 999.2 1027 57.7
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 8.7e-289 997.3 910 65.6
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 5.6e-288 994.6 1009 62.5
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.1e-287 992.6 875 64.5
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 2.4e-286 989.2 927 62.2
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 3.1e-286 988.8 916 62.8
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 1.5e-285 986.5 928 61.5
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 2.0e-285 986.1 1039 61.0
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 2.6e-285 985.7 940 60.4
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 4.5e-285 984.9 1033 59.3
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 4.5e-285 984.9 941 61.4
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 5.8e-285 984.6 1030 59.7
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.7e-284 983.0 1023 58.1
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 3.8e-284 981.9 950 60.7
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 3.2e-283 978.8 865 64.6
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 4.1e-278 961.8 1054 55.4
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 5.5e-275 951.4 951 61.4
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.5e-272 943.3 913 60.5
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 8.2e-271 937.6 1029 56.1
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 9.1e-270 934.1 1042 56.8
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.5e-264 916.8 857 60.8
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 4.1e-262 908.7 1029 52.3
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 2.7e-258 896.0 841 59.9
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 6.3e-255 884.8 879 61.7
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 2.6e-253 879.4 1045 53.0
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 2.7e-250 869.4 1073 54.6
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 3.5e-245 852.4 911 56.9
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 4.2e-243 845.5 1022 51.0
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 8.8e-241 837.8 826 61.0
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.3e-239 833.9 610 74.9
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 2.2e-239 833.2 864 54.6
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.3e-228 796.6 618 69.4
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.3e-227 792.7 701 65.8
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.5e-224 783.9 1074 47.6
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 9.8e-216 754.6 590 69.2
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 1.1e-211 741.1 894 52.3
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 6.6e-196 688.7 826 50.8
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 8.4e-191 671.8 847 46.5
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 7.3e-187 658.7 938 43.2
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.8e-180 637.5 916 43.8
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 1.5e-176 624.4 544 64.2
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.2e-168 598.2 754 51.5
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 1.9e-166 590.9 499 67.5
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.0e-156 557.0 895 42.0
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 3.9e-156 556.6 881 40.6
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 4.3e-155 553.1 586 57.7
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 5.0e-151 539.7 635 50.1
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.4e-137 495.0 833 38.9
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 2.2e-135 487.6 355 73.2
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 8.3e-106 389.4 881 34.6
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 8.1e-93 346.3 629 39.7
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.1e-92 345.9 369 54.2
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 1.1e-81 309.3 728 34.2
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.2e-80 305.8 295 56.6
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 4.0e-76 290.8 415 44.3
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.2e-67 262.7 730 30.1
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 2.7e-64 251.5 202 67.8
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.9e-62 245.4 179 72.1
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 5.8e-59 233.8 235 61.7
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 4.6e-48 197.6 228 50.9
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 8.7e-47 193.4 165 73.3
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 4.8e-37 161.0 159 59.7
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.0e-34 153.3 155 58.7
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 9.7e-30 136.7 122 65.6
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 8.2e-29 133.7 132 57.6
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 6.3e-21 107.5 226 51.3
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 5.3e-20 104.4 215 53.5
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 1.6e-19 102.8 57 84.2
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 4.5e-19 101.3 51 94.1
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.7e-18 99.4 134 43.3
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 8.5e-18 97.1 81 60.5
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 3.1e-12 78.6 212 46.2
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 3.2e-09 68.6 45 68.9
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 3.2e-09 68.6 45 68.9
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 1.2e-08 66.6 45 66.7
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 1.2e-08 66.6 45 66.7
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 2.8e-08 65.5 45 64.4
Psat7g258920 Pisum sativum HOM05D002153 ORTHO05D002137 3.0e-07 62.0 50 64.0
Psat4g213600 Pisum sativum HOM05D002050 ORTHO05D001949 5.2e-07 61.2 48 66.7
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 8.8e-07 60.5 85 62.4
Psat1g211080 Pisum sativum HOM05D000001 ORTHO05D322910 1.2e-06 60.1 48 64.6
Psat3g173480 Pisum sativum HOM05D002362 ORTHO05D002465 1.5e-06 59.7 46 67.4


User provided reference genes

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