Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1602.8 784 100.0
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1426.0 784 89.4
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1424.1 785 89.6
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1374.8 785 85.2
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1349.0 785 83.7
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1349.0 785 83.7
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1343.9 785 83.1
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1343.6 785 83.4
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1303.1 780 81.2
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1274.6 783 79.3
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1273.1 783 79.3
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1271.9 784 78.7
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1261.5 786 78.2
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1261.5 784 78.3
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1181.0 774 75.2
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1172.5 774 74.7
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1168.7 801 73.4
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1166.8 784 72.7
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1160.6 790 73.8
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1160.2 784 72.3
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 0.0e+00 1157.9 829 70.6
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1155.2 785 72.6
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1147.5 780 73.2
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1144.0 785 72.7
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1134.4 775 72.6
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1134.4 774 72.0
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1133.6 774 72.5
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1133.2 775 72.6
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1124.8 785 70.7
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1117.8 782 69.7
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1115.9 784 70.3
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 0.0e+00 1112.4 788 69.9
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1110.1 793 70.4
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 0.0e+00 1109.7 788 69.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 0.0e+00 1108.6 782 70.1
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1105.1 777 71.6
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1105.1 802 69.8
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1103.6 776 71.0
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1100.5 775 70.3
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1100.1 776 70.5
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1099.7 783 69.6
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1098.2 776 70.6
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1098.2 776 70.4
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 0.0e+00 1097.4 787 69.5
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1097.0 769 72.2
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1093.6 775 70.5
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1093.2 776 70.1
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1088.9 782 69.9
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1088.2 774 69.8
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 0.0e+00 1083.6 787 68.5
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1082.4 774 69.9
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 0.0e+00 1079.7 785 68.7
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1077.0 778 69.7
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1075.5 775 69.2
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 5.4e-312 1074.3 785 68.4
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 5.4e-312 1073.5 770 69.1
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 1.1e-311 1072.8 774 69.1
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 4.1e-310 1067.8 779 68.3
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 6.9e-310 1067.0 778 68.1
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 9.0e-310 1066.6 775 68.6
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 1.7e-308 1062.4 784 67.9
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 3.8e-308 1061.2 783 67.9
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 5.0e-308 1060.8 774 69.0
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 3.2e-307 1058.1 775 68.5
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 4.2e-307 1057.7 774 68.2
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 5.5e-307 1057.4 775 68.6
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 1.2e-306 1056.2 774 69.1
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 1.6e-306 1055.8 775 67.9
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 6.1e-306 1053.9 774 70.5
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.0e-305 1051.6 787 67.6
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.1e-304 1049.7 775 68.0
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 9.7e-304 1046.6 775 68.0
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 1.3e-303 1046.2 787 66.2
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 3.7e-303 1044.6 774 68.6
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.2e-303 1043.5 775 67.2
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.8e-302 1042.3 757 68.8
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 1.3e-300 1036.2 785 66.9
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.9e-300 1035.0 774 66.7
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 5.0e-300 1034.2 784 66.8
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.1e-299 1033.1 788 66.0
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 1.2e-298 1029.6 739 70.0
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.7e-298 1027.7 809 63.2
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 7.9e-298 1026.9 779 66.4
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.0e-297 1026.5 774 66.5
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.6e-296 1021.9 773 66.2
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.4e-296 1020.4 774 66.4
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.8e-294 1015.8 776 66.0
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 2.0e-293 1012.3 779 66.5
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 8.5e-292 1006.9 777 65.0
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 8.5e-292 1006.9 777 65.0
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 2.1e-290 1002.3 772 65.8
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 2.6e-288 995.3 782 65.0
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 7.4e-288 993.8 745 68.6
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 6.3e-287 990.7 774 65.1
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 1.1e-286 989.9 778 64.4
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 5.3e-286 987.6 778 64.9
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.2e-285 986.5 781 64.0
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.2e-285 986.5 779 64.3
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.2e-285 986.5 777 63.6
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.2e-285 986.5 778 64.4
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.2e-285 986.5 773 63.4
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.6e-285 986.1 807 63.4
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.5e-283 979.5 775 64.8
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.9e-283 979.2 772 64.6
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.2e-283 978.0 769 65.7
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 1.8e-281 972.6 775 63.0
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 8.8e-281 970.3 778 63.2
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.5e-280 969.5 774 62.3
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 1.5e-280 969.5 773 62.0
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 2.0e-280 969.1 774 62.0
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 2.6e-280 968.8 773 62.5
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.8e-279 964.5 775 63.7
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 3.1e-278 961.8 775 63.6
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.6e-277 959.5 764 62.6
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 4.5e-277 958.0 782 61.3
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 2.9e-276 955.3 770 62.5
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.1e-275 953.4 769 62.3
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 3.6e-274 948.3 789 61.7
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 6.1e-274 947.6 771 62.0
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.5e-272 943.0 768 62.0
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 3.7e-271 938.3 722 66.2
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.4e-270 936.4 783 60.8
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.2e-269 933.3 782 62.1
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 2.7e-269 932.2 792 60.9
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 3.0e-265 918.7 792 60.0
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 4.1e-262 908.3 858 57.8
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 1.7e-260 902.9 734 65.3
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 8.6e-260 900.6 787 61.0
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.6e-256 889.0 781 58.6
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 2.9e-255 885.6 775 59.6
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 3.7e-255 885.2 775 60.0
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 1.9e-251 872.8 780 59.1
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 5.2e-249 864.8 761 59.7
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 2.0e-248 862.8 779 58.8
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 2.0e-248 862.8 779 58.7
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 5.8e-232 808.1 739 57.0
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 2.8e-226 789.3 707 60.7
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 1.1e-217 760.8 687 58.7
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 5.0e-183 645.6 779 46.5
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 5.5e-182 642.1 769 46.3
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 7.4e-179 631.7 774 46.5
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 4.8e-178 629.0 398 74.9
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 4.8e-178 629.0 398 74.9
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 4.8e-178 629.0 793 45.6
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.2e-173 614.4 807 44.0
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.7e-170 604.0 810 44.0
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 9.1e-169 598.2 444 66.7
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.3e-162 577.8 419 70.6
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 2.4e-153 547.0 790 41.0
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.7e-144 516.9 403 64.5
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.8e-140 504.2 566 47.9
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 1.7e-130 471.1 270 81.1
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 4.6e-128 463.0 456 56.6
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.1e-117 425.6 255 77.6
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.9e-114 417.2 454 48.0
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 3.2e-97 360.5 739 33.7
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.5e-78 298.5 279 57.7
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.6e-67 261.2 760 27.2
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 1.4e-60 238.8 289 47.8
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.2e-59 235.7 184 64.1
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 4.2e-49 200.7 153 67.3
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.2e-42 178.3 90 84.4
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.4e-38 164.1 150 60.0
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.8e-37 161.4 76 92.1
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.1e-24 118.6 174 37.4
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 5.8e-22 110.5 142 38.7
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 9.2e-12 76.6 103 38.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 4.6e-11 74.3 108 40.7
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.1e-09 69.7 64 56.2
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 3.3e-09 68.2 101 38.6
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 6.2e-08 63.9 74 43.2


User provided reference genes

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