Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 1.3e-157 559.7 275 100.0
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 8.2e-125 450.7 280 82.1
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 5.2e-119 431.4 282 77.7
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 7.5e-118 427.6 286 76.2
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.7e-115 419.1 286 76.2
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.7e-115 419.1 282 77.0
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 4.5e-115 418.3 284 75.7
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.7e-114 416.4 286 75.5
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.9e-114 415.6 282 76.6
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 9.5e-105 384.0 286 71.0
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 9.5e-105 384.0 281 70.1
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 9.5e-105 384.0 282 69.5
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 6.1e-104 381.3 280 70.4
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 1.4e-103 380.2 282 69.9
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 1.6e-99 366.7 280 66.8
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 1.6e-99 366.7 277 66.8
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 2.7e-99 365.9 278 65.1
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 5.9e-99 364.8 280 65.0
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 1.3e-98 363.6 279 67.4
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 1.3e-98 363.6 280 66.8
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 3.9e-98 362.1 278 65.8
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 8.6e-98 360.9 283 64.0
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 9.5e-97 357.5 277 63.5
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.2e-96 357.1 277 65.0
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 2.1e-96 356.3 277 63.9
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.7e-96 355.1 277 64.6
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 8.0e-96 354.4 274 65.3
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 1.4e-95 353.6 270 65.2
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 1.4e-95 353.6 282 65.2
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 1.5e-94 350.1 277 63.2
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 2.6e-94 349.4 275 64.7
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 3.4e-94 349.0 278 62.6
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 1.7e-93 346.7 283 62.2
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 8.3e-93 344.4 276 63.4
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.4e-92 342.8 287 61.7
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 4.1e-92 342.0 277 59.9
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 4.1e-92 342.0 278 61.5
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 5.4e-92 341.7 277 60.6
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 2.3e-90 336.3 281 63.7
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 3.0e-90 335.9 282 60.6
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 3.0e-90 335.9 279 60.9
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 7.3e-89 331.3 279 59.9
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 9.5e-89 330.9 285 60.0
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 9.5e-89 330.9 279 60.2
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 1.2e-88 330.5 286 59.8
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 1.6e-88 330.1 276 62.0
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 3.6e-88 328.9 273 61.5
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 3.6e-88 328.9 273 61.2
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 3.6e-88 328.9 273 61.2
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.6e-88 328.9 273 60.8
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 6.2e-88 328.2 285 58.9
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 6.2e-88 328.2 274 61.7
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 6.2e-88 328.2 279 59.5
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 8.1e-88 327.8 274 61.7
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 8.1e-88 327.8 273 60.4
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 1.1e-87 327.4 273 61.5
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.1e-87 327.4 273 61.2
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 1.1e-87 327.4 280 60.4
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 1.4e-87 327.0 273 61.9
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 2.3e-87 326.2 274 61.7
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 2.3e-87 326.2 279 61.3
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 3.1e-87 325.9 274 59.5
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 3.1e-87 325.9 275 59.6
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 3.1e-87 325.9 280 59.3
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 4.0e-87 325.5 279 58.8
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 4.0e-87 325.5 273 60.8
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 4.0e-87 325.5 273 60.8
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 5.2e-87 325.1 273 60.8
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 5.2e-87 325.1 286 59.4
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 8.9e-87 324.3 336 52.4
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 2.6e-86 322.8 281 60.1
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 3.4e-86 322.4 274 58.8
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 7.5e-86 321.2 275 58.9
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 4.9e-85 318.5 271 59.0
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 4.9e-85 318.5 267 62.5
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 8.3e-85 317.8 273 60.4
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 1.1e-84 317.4 274 57.7
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 1.1e-84 317.4 309 56.3
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 1.1e-84 317.4 275 59.6
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 5.4e-84 315.1 289 56.1
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 1.2e-83 313.9 230 67.0
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 1.2e-83 313.9 275 55.6
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 1.6e-83 313.5 280 57.5
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 1.6e-83 313.5 284 56.7
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 2.1e-83 313.2 260 62.3
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 4.6e-83 312.0 279 57.7
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 3.0e-82 309.3 299 54.2
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 6.6e-82 308.1 278 59.4
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.5e-81 307.0 276 57.6
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 2.5e-81 306.2 277 55.6
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 7.3e-81 304.7 285 56.1
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 1.2e-80 303.9 276 56.9
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 6.2e-80 301.6 256 61.7
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 6.2e-80 301.6 209 74.6
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 8.1e-80 301.2 301 57.5
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 5.2e-79 298.5 213 71.4
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 5.2e-79 298.5 206 72.3
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 8.9e-79 297.7 189 75.7
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 1.2e-78 297.4 278 60.1
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 9.9e-78 294.3 298 53.0
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 2.9e-77 292.7 286 56.6
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 8.4e-77 291.2 231 63.2
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 1.1e-76 290.8 275 54.2
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 1.9e-76 290.0 282 52.5
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 7.1e-76 288.1 276 53.6
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 2.1e-75 286.6 232 62.5
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 1.7e-74 283.5 231 61.5
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.3e-74 283.1 213 66.2
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 3.0e-74 282.7 193 70.5
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 5.1e-74 282.0 276 53.3
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 9.6e-73 277.7 188 72.9
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 2.4e-71 273.1 285 49.8
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 4.0e-71 272.3 269 51.3
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 4.0e-71 272.3 220 61.8
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 2.0e-70 270.0 234 58.5
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 6.4e-69 265.0 283 47.7
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.2e-68 262.3 278 53.6
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.2e-67 260.8 217 60.8
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 8.7e-66 254.6 212 59.9
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 4.8e-64 248.8 191 65.4
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 2.9e-61 239.6 229 55.0
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 4.3e-57 225.7 230 51.3
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 5.8e-54 215.3 231 51.1
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.8e-53 212.6 164 63.4
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 1.3e-48 197.6 282 37.9
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 8.1e-48 194.9 194 58.8
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 3.4e-46 189.5 194 57.7
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 3.8e-45 186.0 240 38.3
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.8e-39 167.2 217 44.2
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.3e-37 161.0 120 65.0
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 2.1e-35 153.7 120 63.3
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 1.3e-34 151.0 120 60.8
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 3.9e-34 149.4 210 37.6
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 2.5e-33 146.7 110 66.4
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 7.4e-33 145.2 96 72.9
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 3.1e-31 139.8 271 32.5
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.7e-21 107.5 87 60.9
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 5.5e-20 102.4 88 58.0
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 7.2e-20 102.1 207 36.7
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.1e-17 94.7 123 42.3
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.1e-17 94.7 132 40.9
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 1.7e-16 90.9 95 48.4
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 6.3e-16 89.0 208 28.4
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.1e-15 88.2 70 61.4
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 4.5e-14 82.8 109 48.6
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.5e-12 77.8 135 40.7
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 1.6e-11 74.3 49 79.6
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 6.1e-11 72.4 83 48.2
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 2.6e-09 67.0 220 25.5
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 5.7e-09 65.9 44 70.5
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 7.5e-09 65.5 56 60.7
arahy.Tifrunner.gnm1.ann1.ZRCJ38 Arachis hypogaea HOM05D004903 ORTHO05D005849 7.0e-07 58.9 65 53.8
TPR.G14723 Trifolium pratense HOM05D004903 ORTHO05D005849 1.2e-06 58.2 41 70.7


User provided reference genes

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