Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 4.3e-122 441.4 235 100.0
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 1.3e-99 366.7 235 81.7
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.1e-90 337.0 237 74.7
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.9e-90 336.3 237 74.3
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 2.5e-90 335.9 237 76.4
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 3.6e-89 332.0 237 73.8
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 2.9e-70 269.2 237 64.1
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.9e-67 258.8 235 62.6
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 5.1e-67 258.5 244 60.2
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 8.7e-67 257.7 236 61.4
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 3.7e-65 252.3 238 60.5
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 4.8e-65 251.9 236 61.0
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 6.9e-64 248.1 237 59.9
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 3.9e-59 232.3 248 54.8
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 8.8e-59 231.1 173 71.1
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 2.0e-58 229.9 239 54.4
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 7.4e-58 228.0 240 55.0
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 9.7e-58 227.6 242 53.3
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 2.2e-57 226.5 238 55.0
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.8e-57 225.3 235 57.0
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.8e-57 225.3 235 57.0
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 4.1e-56 222.2 233 55.4
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 2.9e-54 216.1 244 51.2
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 8.5e-54 214.5 235 56.2
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.2e-53 212.2 246 52.4
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 3.3e-50 202.6 229 52.8
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 5.7e-50 201.8 245 54.7
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 9.7e-50 201.1 235 54.0
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 1.7e-49 200.3 232 50.9
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 3.7e-49 199.1 242 50.4
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 2.4e-48 196.4 161 62.7
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 4.1e-48 195.7 123 74.0
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 1.2e-47 194.1 210 51.4
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 5.5e-45 185.3 145 64.8
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 2.0e-42 176.8 172 52.9
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 7.5e-42 174.9 233 47.2
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 9.7e-42 174.5 147 64.6
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 9.1e-40 167.9 238 49.2
MD04G1024400 Malus domestica HOM05D005772 ORTHO05D006468 2.9e-38 162.9 109 75.2
Haze_16205 Corylus avellana HOM05D005772 ORTHO05D006468 2.7e-36 156.4 189 52.9
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 5.2e-35 152.1 232 42.2
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 3.7e-33 146.0 309 37.9
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 2.0e-31 140.2 274 40.5
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.7e-30 137.1 223 40.4
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 7.2e-29 131.7 226 38.5
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 2.1e-28 130.2 210 41.4
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 8.0e-28 128.3 211 39.8
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 1.8e-27 127.1 193 40.4
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 1.8e-27 127.1 211 39.3
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 3.0e-27 126.3 202 47.5
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 1.2e-26 124.4 224 37.9
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 2.6e-26 123.2 208 40.4
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 2.6e-26 123.2 208 40.4
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 9.8e-26 121.3 201 37.8
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 4.9e-25 119.0 197 40.6
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 6.3e-25 118.6 208 36.5
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 8.3e-25 118.2 143 43.4
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 1.4e-24 117.5 208 38.9
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 3.1e-24 116.3 106 51.9
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 1.6e-23 114.0 193 39.4
QL06p047014 Quercus lobata HOM05D001071 ORTHO05D006468 2.0e-23 113.6 138 52.9
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 2.7e-23 113.2 249 34.5
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 5.9e-23 112.1 231 38.5
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.0e-22 111.3 124 44.4
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 1.0e-22 111.3 124 44.4
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 1.7e-22 110.5 186 38.7
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 2.3e-22 110.2 189 37.6
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 3.8e-22 109.4 249 37.3
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 5.0e-22 109.0 198 36.9
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 6.6e-22 108.6 237 33.8
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 8.6e-22 108.2 207 36.7
Eucgr.A00749 Eucalyptus grandis HOM05D005772 ORTHO05D006468 8.6e-22 108.2 172 47.7
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 2.5e-21 106.7 157 48.4
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 2.5e-21 106.7 232 37.5
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 3.3e-21 106.3 249 33.3
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 4.3e-21 105.9 189 37.6
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 4.3e-21 105.9 121 47.9
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 1.6e-20 104.0 232 35.3
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.6e-20 104.0 188 35.6
Duzib192G0394 Durio zibethinus HOM05D005772 ORTHO05D006468 3.6e-20 102.8 137 43.8
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 8.0e-20 101.7 183 39.9
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 1.4e-19 100.9 197 33.5
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 2.3e-19 100.1 229 36.7
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.3e-19 100.1 210 36.7
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 2.3e-19 100.1 203 38.9
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 2.3e-19 100.1 249 33.7
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 3.0e-19 99.8 243 31.7
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 8.9e-19 98.2 233 36.5
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 8.9e-19 98.2 185 38.4
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 1.5e-18 97.4 238 33.2
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 2.0e-18 97.1 185 36.8
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 2.6e-18 96.7 157 40.8
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 5.7e-18 95.5 118 42.4
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 7.5e-18 95.1 199 36.2
Dinv20324 Davidia involucrata HOM05D005772 ORTHO05D006468 1.3e-17 94.4 242 37.2
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.9e-17 93.2 243 30.9
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 3.7e-17 92.8 228 33.3
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.9e-17 92.4 170 40.6
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 8.3e-17 91.7 123 41.5
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 1.4e-16 90.9 181 35.4
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 3.2e-16 89.7 235 32.8
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 4.1e-16 89.4 118 37.3
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 7.0e-16 88.6 119 34.5
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 7.0e-16 88.6 190 30.0
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 2.7e-15 86.7 200 36.5
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 5.9e-15 85.5 201 33.3
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 7.8e-15 85.1 118 36.4
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.0e-14 84.7 233 32.6
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 1.1e-13 81.3 99 38.4
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 1.1e-13 81.3 167 34.1
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 1.9e-13 80.5 171 35.7
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 4.3e-13 79.3 202 31.2
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 4.3e-13 79.3 231 32.9
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 9.5e-13 78.2 228 31.6
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 1.2e-12 77.8 215 30.7
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 2.8e-12 76.6 202 31.2
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 3.6e-12 76.3 228 30.3
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 1.8e-11 73.9 102 37.3
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 3.1e-11 73.2 86 38.4
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 5.2e-11 72.4 82 43.9
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 1.2e-10 71.2 231 30.7
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 3.4e-10 69.7 84 38.1
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 3.7e-09 66.2 204 30.4
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 1.4e-08 64.3 132 40.9
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 7.0e-08 62.0 208 30.8
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.0e-06 58.2 68 39.7
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.3e-06 57.8 65 40.0
ATR0618G111 Amborella trichopoda HOM05D005772 ORTHO05D006468 3.9e-06 56.2 113 37.2
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 5.0e-06 55.8 133 35.3


User provided reference genes

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