Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 3.8e-76 288.1 148 100.0
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 7.2e-59 230.7 148 79.1
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 7.7e-53 210.7 148 73.6
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 7.7e-53 210.7 148 73.6
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 7.7e-53 210.7 148 73.6
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 1.3e-52 209.9 148 73.6
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 9.4e-51 203.8 148 71.6
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 3.1e-46 188.7 138 68.1
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 3.1e-46 188.7 139 69.1
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 2.0e-45 186.0 132 75.0
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 2.3e-41 172.6 140 59.3
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 5.2e-41 171.4 147 62.6
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 1.2e-40 170.2 141 63.1
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 1.2e-40 170.2 146 62.3
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 2.6e-40 169.1 147 61.2
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 5.7e-40 167.9 142 59.2
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 1.3e-39 166.8 137 60.6
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 2.8e-39 165.6 137 59.9
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 5.4e-38 161.4 148 56.8
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.2e-37 160.2 135 59.3
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 1.2e-37 160.2 135 59.3
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 1.2e-37 160.2 136 59.6
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 1.2e-37 160.2 124 62.1
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 2.7e-37 159.1 148 58.1
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 2.7e-37 159.1 138 60.9
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 3.5e-37 158.7 145 55.9
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 3.5e-37 158.7 150 56.0
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 3.5e-37 158.7 140 57.1
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 3.5e-37 158.7 148 58.1
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 1.0e-36 157.1 120 64.2
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 1.0e-36 157.1 136 58.8
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 1.0e-36 157.1 148 57.4
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 2.9e-36 155.6 148 56.8
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 6.6e-36 154.5 116 59.5
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 6.6e-36 154.5 118 63.6
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 8.6e-36 154.1 146 56.2
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 4.3e-35 151.8 146 54.1
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 7.3e-35 151.0 152 55.9
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 2.8e-34 149.1 148 54.1
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 3.6e-34 148.7 133 59.4
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 4.7e-34 148.3 146 56.2
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 4.7e-34 148.3 147 53.1
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 1.8e-33 146.4 154 54.5
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 6.8e-33 144.4 148 55.4
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 2.6e-32 142.5 153 49.0
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 3.4e-32 142.1 149 50.3
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 4.9e-31 138.3 141 51.8
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 8.3e-31 137.5 138 52.2
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 7.8e-29 131.0 142 48.6
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 7.8e-29 131.0 104 57.7
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 1.7e-28 129.8 138 51.4
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 1.7e-28 129.8 113 58.4
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 3.9e-28 128.6 137 54.7
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 3.9e-28 128.6 138 50.7
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.1e-27 127.1 100 57.0
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 1.5e-27 126.7 113 53.1
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 3.3e-27 125.6 138 47.8
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 3.3e-27 125.6 135 49.6
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 4.3e-27 125.2 150 48.7
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 5.6e-27 124.8 150 51.3
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 9.5e-27 124.0 136 51.5
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 9.5e-27 124.0 121 55.4
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 1.6e-26 123.2 142 47.2
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 1.6e-26 123.2 141 47.5
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 2.1e-26 122.9 152 46.7
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 2.8e-26 122.5 142 47.2
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 2.8e-26 122.5 152 46.7
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 2.8e-26 122.5 139 48.9
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 3.6e-26 122.1 142 45.1
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 3.6e-26 122.1 142 46.5
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 4.7e-26 121.7 142 46.5
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 8.0e-26 120.9 107 58.9
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 8.0e-26 120.9 151 48.3
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 4.0e-25 118.6 92 64.1
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 4.0e-25 118.6 142 48.6
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 5.2e-25 118.2 147 44.9
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 1.2e-24 117.1 134 53.0
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 1.5e-24 116.7 99 65.7
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 7.5e-24 114.4 98 56.1
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 7.5e-24 114.4 144 45.1
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 9.8e-24 114.0 151 47.7
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 1.3e-23 113.6 149 46.3
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 1.7e-23 113.2 149 46.3
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.7e-23 113.2 157 45.2
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.7e-23 113.2 157 45.2
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 8.3e-23 110.9 133 48.1
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 5.4e-22 108.2 78 69.2
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 7.0e-22 107.8 135 48.1
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 1.6e-21 106.7 114 49.1
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 7.3e-19 97.8 117 44.4
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 7.3e-19 97.8 118 46.6
SalBow6G2338 Salvia bowleyana HOM05D007364 ORTHO05D009275 3.6e-18 95.5 122 46.7
Migut.I01209 Erythranthe guttata HOM05D007364 ORTHO05D009275 6.2e-18 94.7 128 44.5
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 3.1e-17 92.4 117 44.4
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 5.2e-17 91.7 95 51.6
Oeu047568.2 Olea europaea HOM05D007364 ORTHO05D009275 8.9e-17 90.9 116 46.6
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 8.9e-17 90.9 147 38.8
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 1.5e-16 90.1 147 38.1
Atru.chr2.3597 Acer truncatum HOM05D007364 ORTHO05D009275 2.0e-16 89.7 68 58.8
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 2.0e-16 89.7 120 45.8
SGA_v2.0_scaffold71G23970 Striga asiatica HOM05D007364 ORTHO05D009275 3.2e-14 82.4 124 41.1
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 6.6e-12 74.7 99 43.4
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 1.1e-11 73.9 89 42.7
SEGI_24559 Sequoiadendron giganteum HOM05D007364 ORTHO05D009275 1.2e-10 70.5 109 38.5
Pp3c19_20210 Physcomitrium patens HOM05D007364 ORTHO05D009275 2.4e-09 66.2 126 34.9
SalBow7G1183 Salvia bowleyana HOM05D003223 ORTHO05D004865 1.2e-08 63.9 105 42.9
AUR62015398 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.5e-08 63.5 62 45.2
AUR62040375 Chenopodium quinoa HOM05D007364 ORTHO05D009275 5.8e-08 61.6 62 43.5
Mapoly0061s0135 Marchantia polymorpha HOM05D007364 ORTHO05D009275 3.8e-07 58.9 117 28.2


User provided reference genes

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