Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 1.1e-207 726.5 395 100.0
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 6.6e-184 647.5 395 86.6
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 3.8e-163 578.6 414 76.8
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 3.2e-162 575.5 413 79.7
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 7.1e-162 574.3 414 76.3
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 9.3e-162 573.9 414 75.6
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 2.6e-156 555.8 436 71.1
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 2.8e-150 535.8 375 74.7
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 5.1e-144 515.0 406 67.7
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 9.6e-143 510.8 395 69.9
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 6.5e-139 498.0 400 66.2
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 4.6e-137 491.9 400 67.5
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 4.6e-137 491.9 401 67.1
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 1.0e-136 490.7 390 66.4
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 1.0e-136 490.7 390 68.2
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 2.3e-136 489.6 406 66.3
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 4.3e-135 485.3 390 69.0
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 1.6e-134 483.4 389 66.1
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 2.8e-134 482.6 402 64.9
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 6.3e-134 481.5 403 64.8
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 1.1e-133 480.7 383 68.4
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 4.6e-129 465.3 398 64.6
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 6.1e-129 464.9 393 64.4
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 1.8e-128 463.4 394 62.7
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 1.8e-128 463.4 394 61.9
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 2.3e-128 463.0 389 66.3
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 2.3e-128 463.0 409 63.3
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 2.3e-128 463.0 393 63.9
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 6.7e-128 461.5 410 62.0
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 6.7e-128 461.5 382 64.7
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 1.9e-127 459.9 394 60.9
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 3.3e-127 459.1 401 62.3
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 2.2e-126 456.4 384 63.5
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 3.7e-126 455.7 326 72.4
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 1.4e-125 453.8 395 61.8
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.8e-125 453.4 394 60.9
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 3.1e-125 452.6 396 61.6
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 2.6e-124 449.5 384 63.0
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 7.7e-124 448.0 342 67.5
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 1.3e-123 447.2 387 61.8
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 2.9e-123 446.0 414 58.5
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 6.5e-123 444.9 405 59.3
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 8.5e-123 444.5 326 71.8
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 1.1e-122 444.1 381 63.0
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 2.5e-122 443.0 380 62.4
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 9.4e-122 441.0 349 66.5
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 1.2e-121 440.7 418 56.7
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 2.1e-121 439.9 339 67.8
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 4.7e-121 438.7 376 63.3
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 1.0e-120 437.6 346 66.8
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 3.0e-120 436.0 352 66.2
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 5.1e-120 435.3 423 56.5
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 1.1e-119 434.1 393 58.5
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 2.0e-119 433.3 348 66.7
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 3.7e-118 429.1 381 60.9
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 7.7e-116 421.4 338 66.3
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 1.3e-115 420.6 351 63.0
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 1.7e-115 420.2 416 55.8
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 2.2e-115 419.9 351 63.0
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 5.0e-115 418.7 374 60.2
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 6.5e-115 418.3 349 62.5
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 8.5e-115 417.9 337 67.4
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 8.2e-110 401.4 347 64.6
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 4.5e-108 395.6 403 56.8
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 3.6e-105 386.0 273 72.9
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 8.0e-105 384.8 335 59.1
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 2.6e-103 379.8 401 52.9
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 3.3e-103 379.4 343 60.9
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 5.7e-103 378.6 343 58.9
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 4.5e-100 369.0 318 64.5
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 2.9e-99 366.3 313 63.6
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 2.1e-97 360.1 398 53.0
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 3.6e-97 359.4 394 52.8
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 2.8e-94 349.7 366 54.6
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 1.7e-91 340.5 244 71.7
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 2.6e-87 326.6 331 52.9
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 1.7e-86 323.9 383 49.9
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 2.8e-86 323.2 402 49.3
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.7e-86 322.8 303 62.0
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 3.7e-86 322.8 217 74.7
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 1.8e-85 320.5 449 45.2
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 2.4e-85 320.1 318 55.0
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 7.0e-85 318.5 274 63.9
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 1.6e-84 317.4 390 49.0
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 2.3e-75 287.0 189 81.5
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 4.0e-72 276.2 202 69.3
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 4.6e-68 262.7 189 72.5
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 3.9e-67 259.6 327 45.0
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 5.1e-67 259.2 354 44.6
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 1.7e-62 244.2 208 64.9
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 1.2e-60 238.0 341 42.2
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 3.3e-58 229.9 319 40.8
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 1.6e-52 211.1 218 56.0
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 1.4e-48 198.0 137 73.7
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 4.5e-39 166.4 118 72.0
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 6.4e-38 162.5 124 68.5
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 1.8e-35 154.5 104 76.0
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 1.6e-33 147.9 113 65.5
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 6.4e-30 136.0 99 70.7
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 2.5e-29 134.0 345 32.8
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 4.6e-28 129.8 87 74.7
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 2.9e-22 110.5 107 53.3
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 7.9e-20 102.4 90 61.1
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 1.9e-18 97.8 122 50.0
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 2.4e-16 90.9 77 50.6
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 2.4e-16 90.9 266 29.3
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 1.7e-09 68.2 92 46.7
THA.LOC104823250 Tarenaya hassleriana HOM05D001509 ORTHO05D001361 3.1e-08 63.9 229 25.8
Nitab4.5_0000499g0130 Nicotiana tabacum HOM05D007236 ORTHO05D009150 5.3e-08 63.2 58 58.6
Rhsim04G0153100 Rhododendron simsii HOM05D001509 ORTHO05D001361 2.2e-06 57.8 227 25.6


User provided reference genes

Program Settings